Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4747
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 33 0.21
Z77665-7|CAI46591.1| 360|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 2.6
U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 4.5
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 4.5
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 27 7.9
Z69659-2|CAA93485.1| 167|Caenorhabditis elegans Hypothetical pr... 27 7.9
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 32.7 bits (71), Expect = 0.21
Identities = 26/72 (36%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Frame = +2
Query: 98 GSHSQQRAPGGPTPQIAAFRRGDTVHSGVLSTAGFREAFCYKLPGRLVPCRLRGQCGRSS 277
G S PG P P A R G G+ G LPGR P L GQCG
Sbjct: 211 GYTSPPGLPGPPGPCGEAGREGPNGTPGLKGEPGNNSIRQISLPGRKGPPGLPGQCGPPG 270
Query: 278 --G*TPAEGAGG 307
G TP G G
Sbjct: 271 PPGYTPPPGPPG 282
>Z77665-7|CAI46591.1| 360|Caenorhabditis elegans Hypothetical
protein K02E11.10 protein.
Length = 360
Score = 31.5 bits (68), Expect = 0.49
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 310 PAAGSFRWGSSARAPTLPTKPARDQPAGKLI---AKGFAEAGG 191
PAAG + SA AP P+ PA PAG + GF AGG
Sbjct: 45 PAAGGYVTAPSAPAPLFPSAPAPAIPAGGYAVAPSGGFGGAGG 87
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 266 GRSSG*TPAEGAGGRREALHGPTNQQR 346
G S G TP +G GG R G NQQ+
Sbjct: 698 GSSGGQTPRQGGGGGRGGHFGTANQQK 724
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 266 GRSSG*TPAEGAGGRREALHGPTNQQR 346
G S G TP +G GG R G NQQ+
Sbjct: 698 GSSGGQTPRQGGGGGRGGHFGTANQQK 724
>U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical
protein F47D12.5 protein.
Length = 633
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 324 TGRRISNDTLRMIYYHDQTVAVVELGTNKLLLNCELIETYDEEDTKRLLRQL 479
TG RI D R +Y HD + + +NK+L +E + K LL Q+
Sbjct: 146 TGLRIL-DVSRSMYKHDTKIINQYVQSNKVLKELRFLECSGTDINKNLLEQI 196
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = -3
Query: 327 PCKASRLPPAPSAGVHPLERPHCPRSRQGTSLPGSL*QKASRKPAVERTPLCTVSPRRKA 148
P K + PP P + P P P R S P + + ++ + P VSP +
Sbjct: 86 PAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPLYSEKQHQQQLRPTTAVSPPKPP 145
Query: 147 AI*GVGPPGA 118
+ PP A
Sbjct: 146 SFAPPVPPAA 155
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = -3
Query: 327 PCKASRLPPAPSAGVHPLERPHCPRSRQGTSLPGSL*QKASRKPAVERTPLCTVSPRRKA 148
P K + PP P + P P P R S P + + ++ + P VSP +
Sbjct: 308 PAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPLYSEKQHQQQLRPTTAVSPPKPP 367
Query: 147 AI*GVGPPGA 118
+ PP A
Sbjct: 368 SFAPPVPPAA 377
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 83 CAICAGSHSQQRAPGGPTPQIAAFRRGDTVHSGVLSTAG 199
C CA + +Q APG P P + G+ HS STAG
Sbjct: 192 CQTCAPA--RQGAPGPPGPAGQPGQPGEPGHSDTSSTAG 228
>Z69659-2|CAA93485.1| 167|Caenorhabditis elegans Hypothetical
protein F07C6.2 protein.
Length = 167
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 276 LERPHCP-RSRQGTSLPGSL*QKASRKPAVERTPLCTVSPRRKAAI*GVGPPGARCWLWL 100
L+R H R RQ L + ++ + A RT T+ + ++ G GPP C LW+
Sbjct: 63 LQRAHKKFRERQLRKLEQQVVRRRTETMARTRTIALTMEREKAMSMNGGGPPFHLCLLWV 122
Query: 99 PAQI 88
+I
Sbjct: 123 LIRI 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,749,260
Number of Sequences: 27780
Number of extensions: 291186
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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