Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4741
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    27   5.0  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    27   5.0  
Z36238-2|CAA85274.1|  378|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormo...    27   8.8  

>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 192 NYSLIYISLVHCTTPVYFVFKMTCDFWL 275
           NY L +IS++H +T  ++ F +    W+
Sbjct: 246 NYYLFWISIIHFSTSFWYYFSVETKQWI 273


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 454 IGRIGYRAPPRVFFFFF 404
           IG  G+ APP VF FFF
Sbjct: 348 IGAFGHEAPPLVFKFFF 364


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 454 IGRIGYRAPPRVFFFFF 404
           IG  G+ APP VF FFF
Sbjct: 346 IGAFGHEAPPLVFKFFF 362


>Z36238-2|CAA85274.1|  378|Caenorhabditis elegans Hypothetical
           protein R74.4 protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 93  IKSAFKVKVECQCGQKYYWDRNTTDRIAQKEGKNYSLIY 209
           IKSA++     +   KY+ DRN  D  AQ+E K  S+ Y
Sbjct: 33  IKSAYR-----KLALKYHPDRNPNDAHAQEEFKKVSIAY 66


>Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical
           protein F09F3.1 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 243 NIQVWYSVLMKCILKNNFYLPFAQF 169
           N+ +W S L  C L  + YLP+  F
Sbjct: 168 NLFIWRSELYPCALDRSEYLPYINF 192


>AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 135 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 406 FSDLNILGNAEKL*ITLNYLVKYLLV 329
           + ++  LG+ EK  + LN+ +KY+LV
Sbjct: 169 YPEIGKLGHLEKKQVFLNFFIKYMLV 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,047,607
Number of Sequences: 27780
Number of extensions: 194212
Number of successful extensions: 428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)