Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4738
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 265 4e-72
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 146 3e-36
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 134 1e-32
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 126 3e-30
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 119 5e-28
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 104 2e-23
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 95 1e-20
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 78 1e-15
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 50 3e-07
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 28 1.6
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 27 3.8
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 6.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 8.7
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 8.7
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 8.7
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 265 bits (650), Expect = 4e-72
Identities = 142/235 (60%), Positives = 169/235 (71%)
Frame = +2
Query: 47 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 226
+SLNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 227 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 406
VTNDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV V ++ K+H
Sbjct: 59 VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118
Query: 407 PQTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNRKEHFT 586
PQ II G+RIA+ A AL +S D+ + A R DLENIARTTLSSKILS K HF
Sbjct: 119 PQVIIDGYRIATKTAIDALRASSIDNSSD--PAKFRSDLENIARTTLSSKILSQNKNHFA 176
Query: 587 KLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVGNA 751
+LAVDAVLRLKGS NL IQIIKI GG L++SFLDEGF+LNK +GV+ PK + NA
Sbjct: 177 QLAVDAVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENA 231
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 146 bits (354), Expect = 3e-36
Identities = 87/222 (39%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Frame = +2
Query: 110 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 289
R + + AI ++VKS+LGP G+DK+LV + G V VTNDGATIL + V++PA K+
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79
Query: 290 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 469
LV++++ QD+EVGDGTTSV + +L++ K+HP TII G+R+A A + + +
Sbjct: 80 LVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTD 139
Query: 470 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNRKEHFTKLAVDAVLRLKGSGN------ 631
+L + S L N+A+T++SSKI+ N + F+ +AVDA+L +K S +
Sbjct: 140 VLSCSVDSLGKES----LINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRY 195
Query: 632 -LKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPK-KVGNA 751
+KA+ I+K G ES L +G+ LN + K +V NA
Sbjct: 196 PVKAVNILKAHGKSSRESVLVKGYALNCTIASQAMKTRVQNA 237
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 134 bits (324), Expect = 1e-32
Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 1/219 (0%)
Frame = +2
Query: 59 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 238
P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 239 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 418
GATI+K + + +PAAK LVD+++ QD EVGDGTTSV V +E + I
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
Query: 419 IAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNRKEHFTKLAV 598
I G+R A+ A + E + H +E LR L A T ++SK++ + FTK+ V
Sbjct: 126 IRGYRKAAQLAVNKIKEIAI-HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVV 184
Query: 599 DAVLRLKGSG-NLKAIQIIKISGGLLEESFLDEGFLLNK 712
DAVL L N I I K+ GG +E+S L +G K
Sbjct: 185 DAVLTLDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKK 223
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 126 bits (305), Expect = 3e-30
Identities = 77/206 (37%), Positives = 123/206 (59%), Gaps = 5/206 (2%)
Frame = +2
Query: 110 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 289
R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGATILK + V +PAAK+
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77
Query: 290 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 469
LVD+S QD E GDGTTSV + KL+++ +HP I ++ A+ + E
Sbjct: 78 LVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKE 137
Query: 470 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNRKEHFTKLAVDAVL-----RLKGSGNL 634
+ + + E+ LR A T+L+SKI+S +AVDAVL R+ + +L
Sbjct: 138 NALAIELSDRESLLRA-----ATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDL 192
Query: 635 KAIQIIKISGGLLEESFLDEGFLLNK 712
K I+I+K GG+++++ L G L +
Sbjct: 193 KDIRIVKKLGGIIDDTELIPGLALTQ 218
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 119 bits (286), Expect = 5e-28
Identities = 76/217 (35%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Frame = +2
Query: 116 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 295
S + + ++V+++LGP+G+DKIL+S G++ VTNDGATIL + V++ AK+LV
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 296 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 475
+SK QD+E+GDGTT V V LI++ +HP I G+ A A + L +A
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHL-DAI 153
Query: 476 FDHQKNLNEASLRVDLENIARTTLSSKILSNRKEHFTKLAVDAVLRLKGSGNLKA-IQII 652
D E + +L A+T+L SK++S +HF +AVDAVL + ++I
Sbjct: 154 SDVVDFSPENT--TNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELI 211
Query: 653 KIS---GGLLEESFLDEGFLLNKKVGVHQ-PKKVGNA 751
K+ GG ++++ L +G +++K + Q P ++ NA
Sbjct: 212 KVDGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENA 248
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 104 bits (249), Expect = 2e-23
Identities = 65/228 (28%), Positives = 122/228 (53%), Gaps = 7/228 (3%)
Frame = +2
Query: 56 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 235
+P+ ++ +MS+ A A+ D++++ LGP+ M K+L+ G V +TN
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 236 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQT 415
DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV + L+++K+HP
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119
Query: 416 IIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNRKEHFTKLA 595
+I ++ A + A + E + N+++ ++ + RT + +K+++ + LA
Sbjct: 120 MIRSFKQALEDALSIIDEITL--PVNVDD---NAEMFRLIRTCIGTKLVARWSDLMCHLA 174
Query: 596 VDAVLRLKGSGN-------LKAIQIIKISGGLLEESFLDEGFLLNKKV 718
+ AV + + N + ++ K+ GG +E S + +G +LNK V
Sbjct: 175 LRAVRTVASTSNGRMEIDIKRYARVEKVPGGEIESSCVLDGVMLNKDV 222
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 95.1 bits (226), Expect = 1e-20
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 4/211 (1%)
Frame = +2
Query: 131 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 310
AI + D++KS LGP G K+LV +G +++T DG +L + + NP A + +
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81
Query: 311 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 490
QD+ GDGTTSV + I + LHP I G+ +A + A L D +
Sbjct: 82 QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV 141
Query: 491 NLNEASLRVDLENIARTTLSSKILSNRKEHFTKLAVDAVLRLKGSG---NLKAIQIIKIS 661
+ R L N+A+T+LS+KI S E VDA+L ++ +L ++I+K+
Sbjct: 142 D------REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQ 195
Query: 662 GGLLEESFLDEGFLLNKKV-GVHQPKKVGNA 751
++ L G LL+ PK+V NA
Sbjct: 196 NRSASDTQLIRGLLLDHGARHPDMPKQVKNA 226
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 78.2 bits (184), Expect = 1e-15
Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 4/196 (2%)
Frame = +2
Query: 140 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 319
+ ++ +++LGP G +KI+V+ + Q +TND ATI++ + V +PAAK++VD ++ Q+
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94
Query: 320 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 499
E+GD V V +I L P I G+ +A + L E D +
Sbjct: 95 ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICAD---KIE 151
Query: 500 EASLRVDLENIARTTLSSKILSNRKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGG 667
+L RT +SSK N ++ + L A+L + N+ I+++KI G
Sbjct: 152 TVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAILTVLPKDPSKFNVDNIRVVKIMGS 210
Query: 668 LLEESFLDEGFLLNKK 715
L S + +G + ++
Sbjct: 211 SLYNSQVVKGMVFPRE 226
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 50.4 bits (115), Expect = 3e-07
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Frame = +2
Query: 110 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 277
R S G + V TLGPKG + ++ + G ++T DG T+ +S+ + +N
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100
Query: 278 AAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 445
A+++ D++ +E GDGTT+ TV + + +P + G ++A D
Sbjct: 101 GARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVD 156
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 509 LRVDLENIARTTLSSKILSNRKEHFTKLAVDAVLRLKGSGNLKAIQIIK 655
L V E++ LS LS K T ++ +LR GS LKAI ++K
Sbjct: 518 LPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLK 566
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +3
Query: 618 RDLVI*KLFKLS--KYLEVFLKNHSWM 692
RDLV+ +F L+ ++L F+K+H W+
Sbjct: 756 RDLVVYPVFDLNLKQFLSPFIKDHEWL 782
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 6.6
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +2
Query: 134 IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQ 313
IA+ D+ S LG G+ RN G + DG T LKS+GV + K+ VQ
Sbjct: 324 IAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQ 379
Query: 314 DEEVGD 331
++ D
Sbjct: 380 PDDAND 385
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 140 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI 262
+G++ LGP I+ +CG ++ V+ A + + I
Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQI 797
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 532 RTDHTELKDPFKSQRAFHKISS*CSFAFE--GIW*FESYSNYQNI 660
+ D +L +P+++ FH S C F F+ G W S + N+
Sbjct: 105 KVDVAQLVEPYRNDCIFHDASGACHFFFKEVGNWTVSSIALPSNL 149
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 264 PIDFNIVAPSFVTST*PEFLPQETKILSIP 175
P+D ++ +P TST PE LP+E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,025
Number of Sequences: 5004
Number of extensions: 53358
Number of successful extensions: 143
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -