Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4736
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    32   0.074
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   2.8  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   3.7  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   3.7  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   8.5  

>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 LNIVLN*LRLSLSDNVLFGFGLKMRIMCSHHGG*MVRPK 307
           LN +L  +R    D V++GF L  RIMC  + G   R K
Sbjct: 141 LNRMLKSIRDMTDDKVIYGFSLSYRIMCRFNSGFFYRNK 179


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 486 SLLFVLSLFFTKVYVFYLSIEALRSLPGQLV 394
           S +F L L FT++ +FYLS+  L   P +++
Sbjct: 319 SWIFTLLLTFTQLTIFYLSLNCLIENPYRML 349


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 271 VQSPRWINGTTKDCLSRIVNYSCNP--HVDK 357
           +Q   +I+ T +  L+R  N+SC P  +VDK
Sbjct: 239 LQKGEYIDATKRGSLARFCNHSCRPNCYVDK 269


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 277 SPRWINGTTKDCLSRIVNYSCNPHVDKKAPNAYLCHLYKY 396
           +P++ +     CLS++ N+SC  ++          HLY Y
Sbjct: 294 APKFFDAVLAYCLSQLFNWSCQ-NISSYQRLVSFAHLYSY 332


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 718 TNKTSKNQWYGRQRLGSTCCSLVSLKLENGWTELANS 608
           +NK    +WY R   GS  CS +  K E  W + A S
Sbjct: 568 SNKNDFEKWYTRYANGSPICSEMG-KKEFFWRKKATS 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,367
Number of Sequences: 5004
Number of extensions: 57607
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)