Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4736
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    29   3.8  
11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223     28   8.8  

>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 268 YVQSPRWINGTTKDCLSRIVNYSCNPHVDKKAPN 369
           Y+ +   I+ T K  L+R +N+SC P+ + +  N
Sbjct: 215 YLNADESIDATKKGSLARFINHSCQPNCETRKWN 248


>11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223
          Length = 220

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 461 NKLKTNKRDPSVGGHIKGKTK-LLFLFKSEHFHIYL 565
           N +  ++R PS+GG I   T+ LL L+  +H   Y+
Sbjct: 176 NNMMDSERKPSLGGEIAPPTEILLMLYDQDHTPTYM 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,789,206
Number of Sequences: 37544
Number of extensions: 340646
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)