Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4736
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    31   0.85 
Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    28   6.0  

>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
           protein Y54E2A.6 protein.
          Length = 1798

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 697 QWYGRQRLGSTCCSLVSLKLENGWTELANSDLELFVEVQRR 575
           Q Y +Q  G  C ++  + L+NGW++ AN+ L +   V+++
Sbjct: 710 QLYVQQNAGRLCRAMFEMVLKNGWSQAANAFLGIAKCVEKQ 750


>Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical
           protein T03E6.8 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 400 ASICINDRDMH*VLFYLHEGYRNNLRYAISSLW 302
           A I I D  +H +L    +G  NNL + +S+LW
Sbjct: 279 ADISILDNGLHFLLLISSQGAVNNLMHIVSALW 311


>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 486 SLLFVLSLFFTKVYVFYLSIEALRSLPGQLVFV*MTEICIRCFFIYMRVTGII 328
           SL+F+ +  F  +Y F+L    L +L  +L    M E  I   ++ MR TGI+
Sbjct: 32  SLIFIKTKIFA-IYRFFLIWHVLDNLFFELYSSVMVEPAIHSPYLMMRTTGIL 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,754,524
Number of Sequences: 27780
Number of extensions: 318700
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)