Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4735
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    29   0.64 
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    27   2.6  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   3.4  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   5.9  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   5.9  

>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 565 LTICRYLEPIAGPRFFLGPYRTKMTPLHSHIRRPIYARDQSPVR 434
           +  CR    + G RF  G +   +TP   +I    Y R++ P+R
Sbjct: 159 MAACRNGPSLLGLRFLAGIFEASITPAFINITAMWYRREEQPMR 202


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 647 SVILFFSSRIPNLLRGHCARGGGGL 573
           S +L+F +RIP +++ H A+   GL
Sbjct: 185 SSVLYFCARIPQIIKNHKAKSTEGL 209


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 361 AGSDPAGYPGTPSLVIVLTAGTPLL*PGSDP 453
           AG    GYPG  +   V   G P++ PGS P
Sbjct: 522 AGGPAPGYPGMNARGPVPAQGRPMMMPGSVP 552


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 468 RRM*ECRGVIL-VR*GPKKNLGPAIGSKYLQIVKSHKSPSSPGAVTSQEIRDPARKKKD 641
           RR   C G  L +     +++ P  G  ++ +     S   PG V S E+R+P R   D
Sbjct: 254 RRPQRCTGTALNISVSMMESVCPNSGG-HIMLFAGGPSTVGPGTVVSTELREPIRSHHD 311


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 506 PH*NDSPALSHPTSDLRPGSEPGQSRGVPA 417
           P  N++PA S  ++  RP S P  S  VPA
Sbjct: 257 PPANETPASSSSSAKARPVSVPDMSSPVPA 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,300
Number of Sequences: 5004
Number of extensions: 54121
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)