Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4735
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0548 - 10467342-10468810,10470309-10471632                       31   0.66 
01_06_0739 - 31601656-31602233,31602777-31602906                       30   1.5  
05_01_0346 - 2710420-2710683,2711595-2711672,2711861-2711888,271...    29   2.6  
06_03_1153 - 28047125-28047751                                         28   6.1  

>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 655 DFQVSSFFFLAGSRISCEVTAP--GEEGDLWDLTICRYLE 542
           DF  +  F ++  +++C V  P  G  GD+  +T+C Y+E
Sbjct: 208 DFDRNGSFSMSNFKVTCVVYQPYFGVSGDVGTITVCEYME 247


>01_06_0739 - 31601656-31602233,31602777-31602906
          Length = 235

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 354 SAGWF*PSRVSRNTESGYSVDRGNPSTLTGL*SRA*IGRR 473
           ++GW  PS  +R  E+G+  D  NP+T     +R  IGRR
Sbjct: 7   ASGWLRPSATARLCEAGFFTDYANPAT-----TRICIGRR 41


>05_01_0346 -
           2710420-2710683,2711595-2711672,2711861-2711888,
           2711973-2712022,2712112-2712165,2712240-2712281,
           2712583-2712646,2713831-2713851,2714310-2714479,
           2714746-2714910
          Length = 311

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 624 PDPESPARSLRQGRRGTCGT*QSADIWSRLRAQ 526
           P  ESPA + R+ R   C T +S D+ S LRA+
Sbjct: 99  PGSESPAINRREQRLANCLTLRSVDLGSSLRAR 131


>06_03_1153 - 28047125-28047751
          Length = 208

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 602 GHCARGGGGLVGLDNLQIFGADCG 531
           GH A GGGGL G  ++   G D G
Sbjct: 159 GHSANGGGGLDGSSSIGTNGGDIG 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,589,623
Number of Sequences: 37544
Number of extensions: 369949
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)