Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4735
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    31   0.78 
U42839-8|AAC69016.1|  189|Caenorhabditis elegans Osmotic avoidan...    30   1.8  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       29   4.2  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    29   4.2  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    29   4.2  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   4.2  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    27   9.6  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    27   9.6  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    27   9.6  

>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -3

Query: 545 GADCGPKVLFRALPH*NDSPALSHPTSDLRPGSEPGQSRGVPAVNTITRLGV 390
           G DCG K LF      + S   +   S +RPGS+ GQ R  P  + I + GV
Sbjct: 383 GGDCGSKFLFC-----DTSTGAARCVSRIRPGSQCGQFRVNPCFSGICQNGV 429


>U42839-8|AAC69016.1|  189|Caenorhabditis elegans Osmotic avoidance
           abnormal protein11 protein.
          Length = 189

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = -3

Query: 599 HCARGGGGLVGLDNLQIFGADCGPKVLFRALPH*NDSPALSHPTSDLRPGSEPGQSRGVP 420
           HCA G  GLV L +L        P V+   LP  +D  +L  P +D R  +    SR  P
Sbjct: 70  HCAVGKAGLVELPDLG------SPLVMPPVLPRGSDFASLDLPIADERKPAHIHSSRTAP 123

Query: 419 AVNTIT 402
               +T
Sbjct: 124 QTTRLT 129


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 564  KSHKSPSSPGAVTSQEIRDPARKKKDDT*KSP 659
            K  KSPSSP   T  E ++ + +K ++  KSP
Sbjct: 1828 KKEKSPSSPTKKTGDESKEKSPEKPEEKPKSP 1859


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 564  KSHKSPSSPGAVTSQEIRDPARKKKDDT*KSP 659
            K  KSPSSP   T  E ++ + +K ++  KSP
Sbjct: 1828 KKEKSPSSPTKKTGDESKEKSPEKPEEKPKSP 1859


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 564  KSHKSPSSPGAVTSQEIRDPARKKKDDT*KSP 659
            K  KSPSSP   T  E ++ + +K ++  KSP
Sbjct: 1828 KKEKSPSSPTKKTGDESKEKSPEKPEEKPKSP 1859


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 564  KSHKSPSSPGAVTSQEIRDPARKKKDDT*KSP 659
            K  KSPSSP   T  E ++ + +K ++  KSP
Sbjct: 1828 KKEKSPSSPTKKTGDESKEKSPEKPEEKPKSP 1859


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 358 QAGSD-PAGYPGTPSLVIVLTAGTP 429
           +AG+  PAG PGTP++   LT G P
Sbjct: 196 EAGAPGPAGEPGTPAISEPLTPGAP 220


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 358 QAGSD-PAGYPGTPSLVIVLTAGTP 429
           +AG+  PAG PGTP++   LT G P
Sbjct: 191 EAGAPGPAGEPGTPAISEPLTPGAP 215


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 358 QAGSD-PAGYPGTPSLVIVLTAGTP 429
           +AG+  PAG PGTP++   LT G P
Sbjct: 191 EAGAPGPAGEPGTPAISEPLTPGAP 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,807
Number of Sequences: 27780
Number of extensions: 336239
Number of successful extensions: 779
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)