Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4734
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    23   5.8  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   6.3  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   6.3  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 22.6 bits (46), Expect(2) = 5.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 363  YLRCRSEEFCDCQ 401
            YLR R  +F DCQ
Sbjct: 1023 YLRLRDTDFLDCQ 1035



 Score = 21.4 bits (43), Expect(2) = 5.8
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +3

Query: 189  RMCLEHK*VVYYQRWQSVYLDKNFL 263
            ++CL+   ++Y  R +  Y+D ++L
Sbjct: 1000 KLCLDSFKLLYLPRTEDSYIDASYL 1024


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 416 NNSFF*FTNHCPKVRLPALVIVDSYSTYLLITKIIDDYF*LVVERFVARTGRYHH 580
           NN  F F ++ PK  L       S STYL + K +   F + +E   A+T  Y+H
Sbjct: 434 NNELFSFIHNIPKEFLHL-----SDSTYLDLEKQVLRIFNVQIEELDAKTPWYYH 483


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 635 STYQFLLAGSLLRDGNSQGGGTYPCGPQNAQLPVKNNHR*S**LINMY 492
           S Y  +  G L   G ++    YP  PQ  ++   N HR S  L N+Y
Sbjct: 170 SLYDLIQFGKLRPPGINEENANYPFNPQ--EVNTLNKHRHSASLQNLY 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,177
Number of Sequences: 5004
Number of extensions: 62761
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)