Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4733
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.8  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   7.8  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -1

Query: 455 KLMVYRFTRLDSLHHSIEMTFCKLNYVIFNGRCYTTISNPRAIKYLRFSL--ELEGQ 291
           KL++ R +       SIE      +Y+I NG CY  I      + L FS   EL G+
Sbjct: 30  KLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGE 86


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 WVVSSSTNINNKKRPFPQSNSSNDHEPL 187
           W++ S + +  +   +PQ NSS+   PL
Sbjct: 412 WILPSESRLKFEMAKYPQINSSSSMSPL 439


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 264 YIDFSHYLHLTFEFKRET*IFN--STWIADCCITASIE 371
           Y+    Y H  F F+RET I N    W + C + A +E
Sbjct: 13  YLKECGYSHTKFAFERETGIQNLDKQWGSTCQVGALVE 50


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 579 LTVTKKTEDNISCDDTSLNRY 641
           L +T  T+DN++C D+S   Y
Sbjct: 211 LLITHGTDDNVTCSDSSKEFY 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,391
Number of Sequences: 5004
Number of extensions: 52600
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)