Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4730
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1241 - 27286095-27286979                                         30   0.88 
07_03_0117 + 13589997-13590998                                         29   2.0  
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406     28   2.7  
02_05_0522 - 29744368-29745534                                         28   3.6  
10_01_0265 + 2808271-2809064,2809624-2809807                           27   4.7  
03_05_0267 - 22538631-22539452                                         27   4.7  
08_01_0111 + 850047-850218,850366-850649,851017-851763                 27   8.2  

>12_02_1241 - 27286095-27286979
          Length = 294

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 271 RGNPSAWACNCSLMNCGFVC 330
           RG P A AC C+L+ C  +C
Sbjct: 211 RGAPVALACQCALLGCNLLC 230


>07_03_0117 + 13589997-13590998
          Length = 333

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 172 ITGSGTRPTEKIRREIQSAMGGGGPLTRVR 261
           +  + T P + +RR+IQ   GGGG L   R
Sbjct: 251 VASTATYPLDVVRRQIQLGGGGGGTLQAFR 280


>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
          Length = 351

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 169 SITGSGTRPTEKIRREIQSAMGGGGPLTRVR--NGPRGNPSAWA 294
           S++ S +R    ++ E  S  G G P   VR  NGPR +P+A A
Sbjct: 215 SLSASASREEGAVQSEASS--GSGRPHANVRRTNGPRSSPAAMA 256


>02_05_0522 - 29744368-29745534
          Length = 388

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 178 GSGTRPTEKIRREIQSAMGGGGPLTRVRNGPRGNP 282
           G+G R TEK R E Q  +G  G    V+  P   P
Sbjct: 2   GAGGRMTEKEREEQQKLLGRAGNGAAVQRSPTDKP 36


>10_01_0265 + 2808271-2809064,2809624-2809807
          Length = 325

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 33  LPILVTSRGHTRFTKLVAAVVVSELTGL*PED--IANTSPSKAVLRSIYHRIGNATH 197
           LP+LVT    +   K  A   V+EL G  P D  +A+ S      RS     G+A +
Sbjct: 149 LPMLVTPSATSGSGKCAATGCVAELNGACPADLRVASASGPAVACRSACEAFGSAEY 205


>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 235 GGGPLTRVRNGPRGNPSAWACNCS 306
           GGGP  R R  P   P  W C+ S
Sbjct: 163 GGGPTVRRRASPPARPRWWPCSPS 186


>08_01_0111 + 850047-850218,850366-850649,851017-851763
          Length = 400

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 178 GSGTRPTEKIRREIQSAMGGGGPLTRVRNGPRGNPSAWACNCSLMNCGFVCCSRLAVGGL 357
           G+G+RP  +  R I + +GG G    ++  P  +PSA     S  + G    S  A    
Sbjct: 247 GAGSRPASRYLRPIDTVLGGHG---FMKLPPLESPSAATALSSTPSTGGDAASSAAAAAA 303

Query: 358 D 360
           D
Sbjct: 304 D 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,052,008
Number of Sequences: 37544
Number of extensions: 231814
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)