Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4730
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    31   0.34 
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    30   0.79 
AC024200-17|AAF36002.2|  432|Caenorhabditis elegans Hypothetical...    29   1.0  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z82053-1|CAB04834.1|  233|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z82093-3|CAB05020.1|  222|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 257 TLVRGPPPPIAD*ISRRIFSVGRVPDPVIDTAKHCLARASVSNVLRLEPRE 105
           T+ R PPPP+ D    R  S   +P P+    +   A A    +++L P++
Sbjct: 288 TIQRQPPPPVRDVTPARSPSPPPLPPPITTANRETQADAPPPQIIQLPPQQ 338


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 238  GGPLTRVRNGPRGNPSAWACNCSLMNCGFVCCSRLAVGGLDV*GEDEYDLP 390
            G P+    +G    P+ + C  S ++  F CCS ++ GG D  GE+E   P
Sbjct: 1479 GTPVQCSNSGSNSCPAGYKCQKSTLSNRFQCCSSVSGGG-D--GEEEETAP 1526


>AC024200-17|AAF36002.2|  432|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.1 protein.
          Length = 432

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 287 AEGFPRGPFRTLVRGPPPPIAD*ISRRIFSVGRVPDPVIDTA 162
           AE  P  P   L+     P+    SRR+ S  ++ DPV D A
Sbjct: 369 AENLPNHPAMDLISNCEQPLTRKTSRRLLSYRKIRDPVNDEA 410


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 PARNSIGNGGGRPPYEGAERAPGKP 281
           PA +   +GGGRP   G + APG+P
Sbjct: 234 PAGHPGSSGGGRPGPAGPKGAPGQP 258


>Z82053-1|CAB04834.1|  233|Caenorhabditis elegans Hypothetical
           protein T26E3.1 protein.
          Length = 233

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +3

Query: 225 GNGGGRP-PYEGAERAPG 275
           GNGGGRP P  G  R PG
Sbjct: 28  GNGGGRPRPGNGGGRPPG 45


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 409  KQIDVEGGDHIHLHLKRPTHQQQ 341
            K++D+EGG+H+    ++  +QQQ
Sbjct: 1964 KRLDIEGGEHVQHDTQQLRNQQQ 1986


>Z82093-3|CAB05020.1|  222|Caenorhabditis elegans Hypothetical
           protein ZK39.4 protein.
          Length = 222

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 225 GNGGGRPPYEGAERAPG 275
           GNGGGRPP  GA    G
Sbjct: 35  GNGGGRPPGGGANGGCG 51


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 280 PSAWACNCSLMNCGFV 327
           P+   CNC + NC FV
Sbjct: 161 PNGTTCNCPISNCNFV 176


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 280 PSAWACNCSLMNCGFV 327
           P+   CNC + NC FV
Sbjct: 125 PNGTTCNCPISNCNFV 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,548,526
Number of Sequences: 27780
Number of extensions: 162757
Number of successful extensions: 589
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)