Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4730
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   2.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   10.0 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   10.0 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   10.0 

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 351 TNSKPATTYKPAVHQAAVT 295
           T +KP + Y  + H+AA+T
Sbjct: 255 TKTKPTSPYHVSDHKAAIT 273


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 205 IRREIQSAMGGGGPLTR 255
           IRR++ SA+GG  P  R
Sbjct: 562 IRRKLGSALGGWHPSDR 578


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 201  EDPARNSIGNGGGRPPYEGAERAP 272
            ED +       GGRP  E  ER P
Sbjct: 1350 EDESYRGPSASGGRPVPERPERVP 1373



 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 163 AVSITGSGTRPTEKIRREIQS 225
           A   TG+ T PT ++R+  Q+
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQN 272


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 331 CSRLAVGGLDV*GEDEYDLPPLHLFA 408
           C RL +    + GE +   P +H+F+
Sbjct: 131 CGRLWILDTGILGEKQICRPKIHVFS 156


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 4/4 (100%), Positives = 4/4 (100%)
 Frame = +3

Query: 342 CCWW 353
           CCWW
Sbjct: 488 CCWW 491


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 4/4 (100%), Positives = 4/4 (100%)
 Frame = +3

Query: 342 CCWW 353
           CCWW
Sbjct: 541 CCWW 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,311
Number of Sequences: 438
Number of extensions: 1830
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)