Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4725
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   2.8  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   4.8  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    25   8.4  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   8.4  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 210 IVARFLKINRLYHIPFIHSCLQTHIYYNIL 121
           I+ R + ++RLYHI    + ++ ++ YN+L
Sbjct: 237 ILIRKIDVSRLYHIIRAQASIRFYVLYNVL 266


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 531 SFENWCNIFIIERSWCRYTVHYIL*DKV*FCINFNLVLMSKTRGINIDL 677
           S +  CN  +   S C  + H IL  K  +C N  + +  K  GIN  L
Sbjct: 515 SIKRVCNTMLGVPSQCAISKH-ILQSKPQYCANLGMKINVKVGGINCSL 562


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 701 SLKPISKFQVNIYTSGFRH*YQVKIYAKLNLISQDIMNSIAAP 573
           S K    F+V    +G +H YQ++ YA+  L S  +M ++  P
Sbjct: 5   SNKTAKTFRVRKTEAGTKH-YQLRQYAEATLGSGSLMEAVKLP 46


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 114 AFTVYYNIYVFEDMSE*RGYDTICL--F*ENGQQFFVICTFSSYESPSSHAISKN 272
           +F V+ +  +F  + + + Y  + L  + +NGQ +       S ESP SH   +N
Sbjct: 167 SFFVFNDFNLFISLEDLQAYGDLLLSWYRQNGQNYNPTDVSCSIESPISHTPQQN 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,592
Number of Sequences: 5004
Number of extensions: 59216
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)