Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4725
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0388 - 3003096-3003149,3003168-3003197,3003245-3003304,300...    30   2.2  
03_05_0536 - 25357355-25357411,25357463-25357588,25357764-253578...    28   6.6  
04_04_0103 + 22808670-22810007                                         28   8.8  
02_04_0131 - 20046033-20046505,20047140-20047233,20047343-200474...    28   8.8  

>01_01_0388 -
           3003096-3003149,3003168-3003197,3003245-3003304,
           3003431-3003552,3003669-3003794,3003890-3003980,
           3004261-3004386,3004501-3004656
          Length = 254

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 215 KKLLPVFLK*TDCIISPSFTHVFKHIYIIIYCKSFLSRYD 96
           K +L V     D ++SP F  +F ++  +IY +  LS YD
Sbjct: 206 KTILLVLRNLEDNLLSPQFEPIFLNLPCLIYLRRLLSTYD 245


>03_05_0536 -
           25357355-25357411,25357463-25357588,25357764-25357892,
           25358015-25358164,25358253-25358373,25360946-25361247
          Length = 294

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 555 FIIERSW--CRYTVHYIL*DKV*FCINFNLVLMSKTR 659
           F+ +R +  C+Y  HY+  D++ FC++  + ++   R
Sbjct: 248 FLFQRGFPACQYICHYVYVDQILFCMHITIYILHMYR 284


>04_04_0103 + 22808670-22810007
          Length = 445

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/29 (41%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
 Frame = +1

Query: 265 LKIAFKLVVLRSNMVYRHITPSFN-VKKL 348
           LK A+K+ +LR++ V +H++P F+ ++KL
Sbjct: 242 LKKAWKISLLRASAVIKHLSPRFDQIRKL 270


>02_04_0131 -
           20046033-20046505,20047140-20047233,20047343-20047434,
           20047560-20047611,20047721-20047878,20048190-20048280,
           20048397-20049455
          Length = 672

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +1

Query: 85  RSRVSYRDKKLLQYIIIYMCLKT*VNEGDMIQSVYFKKTG 204
           R++V  ++KK + +  +YMC +   +EG +I+ + F  +G
Sbjct: 235 RTKVHQQNKKWMDFTAVYMCQEIQAHEG-LIRVMKFSSSG 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,262
Number of Sequences: 37544
Number of extensions: 297895
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)