Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4719
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.47 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   1.1  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   1.9  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +2

Query: 17  RRIYVVDVYGLQ*PLKTRWAVSSSTHLSNKKKVSFLTQPKHLLNQCFYFIKISIFFGKAI 196
           RRIYV  +      L ++W  S+    +    VSF+  PK+L NQ   F  I+  F   +
Sbjct: 109 RRIYVTSIPEEHRHLPSQWFPSNKIRTTKYTPVSFI--PKNLWNQ---FKNIANAFFLFV 163

Query: 197 IVFPPVPPFC 226
            +   +P FC
Sbjct: 164 TLLQCIPLFC 173


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 360  EKLINADFRKLRYSQNDFYYTRTMNIHIS*KNTHRKKYNGQVFFIVP 500
            E+ +N ++  +    +D +  R +N  I  K  HR+  NG   F+VP
Sbjct: 865  EEELNKEYEGIEKG-HDIFSWRNLNYDIQIKGEHRRLLNGVQGFVVP 910


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 345 SVSLLEKLINADFRKL-RYSQNDFYYTRTMNIHIS 446
           S S L+ L+N D ++L  YS+N FY     N+ IS
Sbjct: 140 SDSKLQTLLNLDGQQLLSYSENPFYLFEVKNLSIS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,314
Number of Sequences: 5004
Number of extensions: 60110
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)