Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4719
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019...    28   7.9  

>05_03_0418 +
           13700855-13700942,13701602-13701728,13701845-13701916,
           13702079-13702153,13702290-13702361,13702477-13702638,
           13702726-13702800,13702880-13702951,13703040-13703108,
           13703196-13703264,13703355-13703429,13703522-13703593,
           13703668-13703737,13703920-13704361,13704442-13704573,
           13704664-13704803,13704910-13705129,13705301-13705536,
           13705732-13706256
          Length = 930

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 309 KSRSLTISNLGVSVSLLEKLINADFRKLRYSQNDFYYTRTMN 434
           K  S T +NLG+  S  +  +N D R    +Q  F Y++ +N
Sbjct: 442 KLNSCTPNNLGLVYSNDDAYLNVDIRACPVNQKRFNYSQVLN 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,446,636
Number of Sequences: 37544
Number of extensions: 346467
Number of successful extensions: 581
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)