Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4719
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z54342-14|CAA91151.2|  107|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z71178-12|CAD44086.1|  342|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z74033-6|CAF31474.1|  321|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80455-5|AAB37883.1|  216|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    27   9.4  
AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical...    27   9.4  

>Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical
           protein C08H9.4b protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 80  SSSTHLSNKK---KVSFLTQPKHLLNQCFYFIKISIF 181
           S+S  L N+    K S LTQ KHL+  CF  I I +F
Sbjct: 6   STSPLLQNRNITPKTSCLTQWKHLVKPCFILIAILVF 42


>Z54342-14|CAA91151.2|  107|Caenorhabditis elegans Hypothetical
           protein C08H9.4a protein.
          Length = 107

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 80  SSSTHLSNKK---KVSFLTQPKHLLNQCFYFIKISIF 181
           S+S  L N+    K S LTQ KHL+  CF  I I +F
Sbjct: 6   STSPLLQNRNITPKTSCLTQWKHLVKPCFILIAILVF 42


>Z71178-12|CAD44086.1|  342|Caenorhabditis elegans Hypothetical
           protein B0024.15 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = +1

Query: 379 IFGNLDIVKTIFTIHEP*IYISHK---KTHTEKNTTDKYFL*FQYLTQGY---Y*LVVNK 540
           +F NLD +++ ++   P   +++    K+H  K+ +   F   Q+  Q +   +  V  K
Sbjct: 19  VFLNLDRIRS-YSTDAPIFEVTNSFSSKSHLSKDGSTNQFYHAQFKDQNHTYQFITVPKK 77

Query: 541 VINNNE*LELTFLWNYGNFQI 603
             +NN  L++T L   GNF I
Sbjct: 78  QCSNNTKLQITILSTAGNFDI 98


>Z74033-6|CAF31474.1|  321|Caenorhabditis elegans Hypothetical
           protein F38B7.8 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 170 ISIFFGKAIIVFPPVPPFCKHS*IRMN 250
           I IFF K I+ + P+PPF + + I ++
Sbjct: 69  IGIFFPKTILGYLPIPPFLESTIIHIS 95


>U80455-5|AAB37883.1|  216|Caenorhabditis elegans Hypothetical
           protein T01D1.3 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 74  AVSSSTHLSNKKKVSFLTQPKHLLNQCFYFIKISIFFGKAIIVFPPV 214
           AV   T  S  KK +F    K   NQ  Y       FG+  IVF PV
Sbjct: 96  AVRGETTGSAHKKTNFARFCKEFKNQYLYVCPDPFRFGQKAIVFCPV 142


>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 532 VNKVINNNE*LELTFLWNYGNFQI 603
           +NK   N E LE TF +N G FQI
Sbjct: 98  INKTNENGEQLESTFHYNTGYFQI 121


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 532 VNKVINNNE*LELTFLWNYGNFQI 603
           +NK   N E LE TF +N G FQI
Sbjct: 98  INKTNENGEQLESTFHYNTGYFQI 121


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 226 AEWWHWW 206
           A+WWHWW
Sbjct: 403 AQWWHWW 409


>AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical
           protein F53C3.2 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 315 RSLTISNLGVSVSLLEKLINADFRKLRYSQNDFYYTRTMNIHIS*KNTHRKKYN 476
           +S+++ NL +S S+  +   +    L+   N F    T N+H+  K+ H   +N
Sbjct: 20  KSMSVGNL-LSYSMCSEASKSHVTNLKVKINSFEINVTENVHLFVKSEHGPTFN 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,717,573
Number of Sequences: 27780
Number of extensions: 329456
Number of successful extensions: 598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)