Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4717
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    33   0.16 
09_04_0338 - 16801189-16801524,16801605-16801679,16801758-168018...    28   5.9  

>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 215 IDEMGSRVDELEKNITDLMTQAGVE 289
           +DEMG+++DELE+++ DL  + G +
Sbjct: 594 LDEMGTKIDELEQSVNDLKAEMGTD 618


>09_04_0338 -
           16801189-16801524,16801605-16801679,16801758-16801831,
           16801972-16802059,16802185-16802336,16802423-16802582,
           16802913-16803128,16803487-16803744,16804202-16804231,
           16804738-16804941,16805790-16805855
          Length = 552

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 107 PASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEK 253
           P+     +++ T    S L+ + +   ++  +  +RID+MG+ V+ L K
Sbjct: 220 PSLHQNGLEQSTNISNSTLEGLANTISNLKAEQRSRIDKMGAEVERLTK 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,522,444
Number of Sequences: 37544
Number of extensions: 282334
Number of successful extensions: 722
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)