Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4716
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163... 30 1.2
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 29 2.8
07_03_1000 - 23220878-23221821,23222164-23223001 29 2.8
07_03_0733 + 21062790-21063639,21063674-21063721,21065428-210654... 29 2.8
12_01_0400 + 3169597-3170504,3170510-3171269 28 5.0
01_07_0163 + 41578264-41578469,41578537-41579422 28 5.0
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118... 28 6.6
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 27 8.7
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 27 8.7
>03_01_0207 -
1633177-1633372,1633623-1633688,1633778-1633859,
1633942-1634037,1634413-1634518,1634602-1634661,
1635114-1635234,1635929-1636040,1636118-1636217,
1636328-1636382,1636489-1636595,1636798-1636850,
1636989-1637114,1637909-1638065,1638226-1638421,
1638917-1639073,1639139-1639379,1639475-1639605,
1639704-1639826,1639929-1639984,1640610-1640767,
1640847-1640984,1641070-1641123
Length = 896
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 205 LVFVPYGPWGSALKELV---REDTRHLRFYHSHPPATGVEVHPYYPGSPL 345
L +P PW + ++L R+D RH+R + PP + +PG+PL
Sbjct: 436 LACLPPLPWTLSPEDLANPNRQDLRHVRVFSVDPPDIADVTNFVHPGTPL 485
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 307 RWRAGANGKNEDAGYLLEPIPSEHSPM-DHTVQKPEGPEAP 188
R R G + DA + + PS HS + DH + P GP P
Sbjct: 393 RGRGQYYGHSRDANHPIGTPPSNHSALADHPSKPPPGPRMP 433
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 298 AGANGKNEDAGYLLEPIPSEHSPMDHTVQKPEGPEAPP 185
AGA G+ + GYL + H+P+ H V + E P
Sbjct: 101 AGAAGRGAELGYLTLAVSDLHAPLQHGVDESYALEILP 138
>07_03_0733 +
21062790-21063639,21063674-21063721,21065428-21065478,
21065559-21065695,21065781-21065997,21066390-21066627,
21066720-21066870,21066990-21067334
Length = 678
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 313 EVHPYYPGSP-LRSSTVRFPEGLFLPRTIPAMGMSSPP 423
+VHP++PGSP LR F P P ++PP
Sbjct: 242 DVHPFFPGSPLLRLDAPAFDVSPPAPSPAPVAADTTPP 279
>12_01_0400 + 3169597-3170504,3170510-3171269
Length = 555
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 264 YPASSFLPFAPARHRSRSSSILPWKPTA 347
YP S +PF+ SSS+L W P A
Sbjct: 6 YPCSLLIPFSTQFEEISSSSLLLWSPQA 33
>01_07_0163 + 41578264-41578469,41578537-41579422
Length = 363
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 309 SGGGRVRMVKTKMPGIFSNQFLQSTP-PWTIRY 214
+GG V +V + G+F+ FL TP PW RY
Sbjct: 130 NGGKPVILVTHSLGGLFAMVFLDRTPLPWRRRY 162
>02_01_0171 -
1179095-1179388,1179668-1179801,1180036-1180900,
1180998-1181258,1181424-1181621,1181752-1181982,
1185337-1185648,1185750-1186247
Length = 930
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 408 NELPSTVFPKRYDMSFFKRGLWRILSGS 491
N+ T + RY+M+F K G W+I G+
Sbjct: 899 NDSYDTKYTTRYEMAFSKLGGWKITEGA 926
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 309 SRSSSILPWKPTAVIHSAFSRRSFFATY----DPGYGNELPSTVFPKRYDMSFFKRGLWR 476
S +SS P+ P ++HSA S+ + +A+Y G G+ T+ P + KR +
Sbjct: 115 SYASSSTPFSPYQLLHSARSQITVWASYCRKRKQGEGDTTHCTMLPLEIRLDISKR-ING 173
Query: 477 ILSGSQRLGSA 509
I++ Q+ G++
Sbjct: 174 IVNDLQKAGNS 184
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 248 SFRALPHGPYGTKTRGTRSPPALL 177
S + +PHGP+ + T PP LL
Sbjct: 98 SLKRIPHGPHDSNTSTEMRPPVLL 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,198,475
Number of Sequences: 37544
Number of extensions: 506831
Number of successful extensions: 1720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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