Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4716
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    25   0.75 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 476 SPQASFEEGH-VIALGKHRGGELIPIAGIVRGKKR 375
           +P   + EGH V+ LG+ RG +L      V  KKR
Sbjct: 107 TPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKR 141


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 285 PFAPARHRSRSSSILPW--KPTAVIHSAFSRR 374
           P  P RHR  +  +L W  K  ++ HSA + R
Sbjct: 53  PLLPLRHRRVTCDVLSWQSKWLSINHSACAIR 84


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 316  LLLRWRAGANGKNEDAGYLL 257
            +LL W++G NG     GY L
Sbjct: 1420 ILLHWKSGHNGGASLTGYTL 1439


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 316  LLLRWRAGANGKNEDAGYLL 257
            +LL W++G NG     GY L
Sbjct: 1416 ILLHWKSGHNGGASLTGYTL 1435


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 584 LIGRRAYGPPDGEWLP 537
           LIG R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 241 LKELVREDTRHLRFYHSHPPATGVEVH--PY 327
           +K+   +   HL+ +H H  +T V+ H  PY
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHHRPY 163


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 560 PPDGEWLPSPMDFSNA 513
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 318 SSILPWKPTAVIHSAFSRRSFFATYD 395
           S ++ W+P AV  S+ S    F  YD
Sbjct: 138 SGLVVWQPPAVYKSSCSIDVEFFPYD 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,773
Number of Sequences: 438
Number of extensions: 5172
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)