Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4712
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598...    31   1.5  
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887...    29   3.4  
04_01_0146 + 1701744-1701860,1702036-1702112,1702247-1702344,170...    28   7.8  

>09_02_0224 -
           5984128-5984923,5985667-5986718,5986800-5987776,
           5988427-5989228,5990966-5991016,5992391-5993464,
           5994458-5994706
          Length = 1666

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 602 PGV---AYLCDNHDHYPNINTFNSMTDTMSSKHTLPSGRTN 489
           PGV   +YL  N  H  + N F+S T T SS   LPS  +N
Sbjct: 655 PGVGLNSYLPSNLRHVQSTNAFSSSTVTKSSSIKLPSSNSN 695


>08_01_0900 +
           8867895-8868938,8869887-8870085,8871500-8871713,
           8871854-8871959,8872077-8872199
          Length = 561

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 6   GTRVSSSYLNNKKKTKNFVEATSW 77
           G ++   YLNN + TKN ++A  W
Sbjct: 409 GQQIMKGYLNNPEATKNTIDAEGW 432


>04_01_0146 +
           1701744-1701860,1702036-1702112,1702247-1702344,
           1704073-1704228,1704671-1705290,1705397-1705458,
           1705551-1705941,1706404-1706575,1706686-1707212
          Length = 739

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 656 SDPIKFQYGWMDRTTLRRPGVAYLCD--NHDHYPNINTFNSMTDTMSSKHTLPS 501
           +DP  +  G++D      PG+AY  D  ++D   N  + NS  +++     LPS
Sbjct: 584 ADPFDYGGGFIDPNKATDPGLAYDVDPKDYDLVVNCESANSSCESIFQNLNLPS 637


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,489,455
Number of Sequences: 37544
Number of extensions: 410079
Number of successful extensions: 778
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)