Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4712
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    29   5.3  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     29   5.3  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     29   5.3  
AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical ...    28   9.3  

>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
 Frame = -2

Query: 484  TVEV-FSHKYCQET-KFTNQISKINFTGESAR--VGTEWAVNLSVHLDY*NTKTRLLFGA 317
            TV V + ++ C  T +   Q  +    G +AR  +GT W +++  HLD  N    +  G 
Sbjct: 958  TVRVGYEYQGCDRTSERVWQTRRSQMMGATARKMIGTMWTLDIHHHLDIVNNVVEMGNGG 1017

Query: 316  FRSYRVSEKAVENNYTWMWMRRRSRYIKTLRGE-LLSSETLFR 191
            +R    SE  V    T+  +    R ++ L+ E  + S +LFR
Sbjct: 1018 YRLITESEPRVS---TFAGLDGVKRDVECLKCEGKVDSISLFR 1057


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
 Frame = -2

Query: 484  TVEV-FSHKYCQET-KFTNQISKINFTGESAR--VGTEWAVNLSVHLDY*NTKTRLLFGA 317
            TV V + ++ C  T +   Q  +    G +AR  +GT W +++  HLD  N    +  G 
Sbjct: 900  TVRVGYEYQGCDRTSERVWQTRRSQMMGATARKMIGTMWTLDIHHHLDIVNNVVEMGNGG 959

Query: 316  FRSYRVSEKAVENNYTWMWMRRRSRYIKTLRGE-LLSSETLFR 191
            +R    SE  V    T+  +    R ++ L+ E  + S +LFR
Sbjct: 960  YRLITESEPRVS---TFAGLDGVKRDVECLKCEGKVDSISLFR 999


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
 Frame = -2

Query: 484  TVEV-FSHKYCQET-KFTNQISKINFTGESAR--VGTEWAVNLSVHLDY*NTKTRLLFGA 317
            TV V + ++ C  T +   Q  +    G +AR  +GT W +++  HLD  N    +  G 
Sbjct: 1082 TVRVGYEYQGCDRTSERVWQTRRSQMMGATARKMIGTMWTLDIHHHLDIVNNVVEMGNGG 1141

Query: 316  FRSYRVSEKAVENNYTWMWMRRRSRYIKTLRGE-LLSSETLFR 191
            +R    SE  V    T+  +    R ++ L+ E  + S +LFR
Sbjct: 1142 YRLITESEPRVS---TFAGLDGVKRDVECLKCEGKVDSISLFR 1181


>AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.6 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 686 NREDQFLSCFSDPIKFQYGWMDRTTLRRPGVAYLCDNHDHYPN 558
           N ++  L CF  P     GW+   T   PG A  CD+ D Y N
Sbjct: 140 NCKNDTLKCFFSPYYPAAGWLSNITTGLPGSA--CDS-DRYNN 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,567,443
Number of Sequences: 27780
Number of extensions: 393415
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)