Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4712
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   7.9  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 703 VGIFRRTGKINSYPVSPILLNFNMDGW 623
           +G+F RT      P+SP LLN  ++ W
Sbjct: 107 LGVFERTE-----PLSPHLLNLEVERW 128


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 452 RNQIYKSNIKNKFYW 408
           +NQI KSN+  +F W
Sbjct: 69  KNQIMKSNVWLRFIW 83


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 95  NKRFSRKFSKNCLDSYIPHTIAGPEKS*YGFNPEKSFRR*K 217
           ++R+S++FS + +D   P +   P  S     P +   + K
Sbjct: 21  SRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEK 61


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 316 FRSYRVSEKAVENNYTWMW 260
           +RSY V + A  N   W+W
Sbjct: 56  WRSYVVCDVAYNNVNNWLW 74


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 478 EVFSHKYCQETKFTNQISKINFTGESARVGTE 383
           EVF  KY     F+    + N   E ARV  E
Sbjct: 149 EVFPDKYMDSGIFSRAREEANVVPEGARVPIE 180


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -1

Query: 623 DRTTLRRPGVAYLCDNHDHYPNINTFNSMTDTMSSK 516
           +R   R P +     N+ +Y N N +N+  +  + K
Sbjct: 72  ERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,793
Number of Sequences: 438
Number of extensions: 4788
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)