Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4711
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0281 - 2067696-2068862                                           29   2.6  
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277...    29   4.6  
03_01_0095 + 759530-760123                                             28   6.1  
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694...    28   8.1  

>07_01_0281 - 2067696-2068862
          Length = 388

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 103 VHRHRRTLFPQQRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP 234
           +H HR   FP       P    T G+   Q +   A ++ DH P
Sbjct: 145 LHEHRAAPFPAPAPAFAPAPAGTMGSSSAQVQGDGAPDNHDHDP 188


>01_01_0349 +
           2776093-2776566,2778211-2778729,2778813-2779048,
           2779135-2779410,2779447-2779549,2780058-2780330
          Length = 626

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -3

Query: 139 AAEGRVSSDDDGRRSGVAVPDRRLGGHAAD 50
           A  G V++DD GR S V     R GGHAAD
Sbjct: 80  AGVGAVAADD-GRCSEVGAAALRAGGHAAD 108


>03_01_0095 + 759530-760123
          Length = 197

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -3

Query: 130 GRVSSDDDGRRSGVAVPDRRL---GGHAA 53
           GR    DDGR+ GVAVP R     GG AA
Sbjct: 86  GRGGGSDDGRQDGVAVPVRAAAAPGGGAA 114


>07_03_1781 +
           29468919-29468951,29469057-29469184,29469349-29469433,
           29469771-29469824,29470072-29470163,29470280-29470383,
           29470811-29470886,29471231-29471678,29471874-29471916,
           29471977-29472209,29472302-29472505,29472595-29472693,
           29472789-29472861,29473373-29473500,29473614-29473836,
           29473992-29474215,29474296-29474423,29475053-29475167,
           29475603-29475658,29475795-29475888,29475966-29476152,
           29476229-29476309,29476384-29476484,29476567-29476629,
           29476800-29476907
          Length = 1059

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 412 LVILGDLDGLLEMLQFDADD 353
           L+ LGD +GLL +L++D DD
Sbjct: 130 LMYLGDENGLLSVLKYDVDD 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,196
Number of Sequences: 37544
Number of extensions: 257882
Number of successful extensions: 1024
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)