Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4711
         (693 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK055443-1|BAB70924.1|  135|Homo sapiens protein ( Homo sapiens ...    31   3.9  
AL590609-7|CAI14806.1|  172|Homo sapiens FUS interacting protein...    31   5.2  
BX537915-1|CAD97898.1|  315|Homo sapiens hypothetical protein pr...    30   6.8  
BC119002-1|AAI19003.1|  844|Homo sapiens prickle homolog 2 (Dros...    30   6.8  
AL590609-9|CAI14807.1|  261|Homo sapiens FUS interacting protein...    30   6.8  
AL590609-5|CAI14804.1|  182|Homo sapiens FUS interacting protein...    30   6.8  
AF419332-1|AAL16666.1|  261|Homo sapiens TLS-associated protein ...    30   6.8  

>AK055443-1|BAB70924.1|  135|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30881 fis, clone FEBRA2004818, highly similar to
           DRR1 PROTEIN. ).
          Length = 135

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = +1

Query: 58  RGRRASGRVQLLRSFVHRHRRTLFPQQRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP* 237
           RG     + +L R   HR R  L  +++  L     + P  + L  R     +  D HP 
Sbjct: 57  RGLGVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLRRQQRLNQVGDGHPA 116

Query: 238 GRDPEPGLPIR 270
           G    PGL  R
Sbjct: 117 GTTHPPGLSSR 127


>AL590609-7|CAI14806.1|  172|Homo sapiens FUS interacting protein
           (serine/arginine-rich) 1 protein.
          Length = 172

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 16  SNGQVDSRPRFDRLRGRRASGRVQLLRSFVHRHRRTLFPQQRGTLHPGACRTPGNRGLQ 192
           S+ + D   R+ R R R    R    RSF + +RR+  P+ R T  P   R+  +   Q
Sbjct: 106 SSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDSQ 164


>BX537915-1|CAD97898.1|  315|Homo sapiens hypothetical protein
           protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 37  RPRFDRLRGRRASGRVQLLRSFVHRHRRTLFPQQRGTLHPGACRTPGNRGLQCRPP-SAR 213
           +P  +R R RRA+ R    R   HR RR+   +    LH  + R   +R L+ RPP  AR
Sbjct: 134 QPMSERTR-RRATSRDDNRRFRPHRSRRSRRSRSDNALHLASEREAISR-LKDRPPLRAR 191

Query: 214 EDQD 225
           ED D
Sbjct: 192 EDYD 195


>BC119002-1|AAI19003.1|  844|Homo sapiens prickle homolog 2
           (Drosophila) protein.
          Length = 844

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 37  RPRFDRLRGRRASGRVQLLRSFVHRHRRTLFPQQRGTLHPGACRTPGNRGLQCRPP-SAR 213
           +P  +R R RRA+ R    R   HR RR+   +    LH  + R   +R L+ RPP  AR
Sbjct: 663 QPMSERTR-RRATSRDDNRRFRPHRSRRSRRSRSDNALHLASEREAISR-LKDRPPLRAR 720

Query: 214 EDQD 225
           ED D
Sbjct: 721 EDYD 724


>AL590609-9|CAI14807.1|  261|Homo sapiens FUS interacting protein
           (serine/arginine-rich) 1 protein.
          Length = 261

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 16  SNGQVDSRPRFDRLRGRRASGRVQLLRSFVHRHRRTLFPQQRGTLHPGACRT 171
           S+ + D   R+ R R R    R    RSF + +RR+  P+ R T  P   R+
Sbjct: 106 SSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRS 157


>AL590609-5|CAI14804.1|  182|Homo sapiens FUS interacting protein
           (serine/arginine-rich) 1 protein.
          Length = 182

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 16  SNGQVDSRPRFDRLRGRRASGRVQLLRSFVHRHRRTLFPQQRGTLHPGACRT 171
           S+ + D   R+ R R R    R    RSF + +RR+  P+ R T  P   R+
Sbjct: 106 SSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRS 157


>AF419332-1|AAL16666.1|  261|Homo sapiens TLS-associated protein
           TASR-2 protein.
          Length = 261

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 16  SNGQVDSRPRFDRLRGRRASGRVQLLRSFVHRHRRTLFPQQRGTLHPGACRT 171
           S+ + D   R+ R R R    R    RSF + +RR+  P+ R T  P   R+
Sbjct: 106 SSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRS 157


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,401,954
Number of Sequences: 237096
Number of extensions: 1358250
Number of successful extensions: 5519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5518
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)