Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4711
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protei...    28   7.3  
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    27   9.6  

>Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical
           protein F54D1.3 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 136 QRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDPEPG 258
           QRG   PGA   PGN G     P+    QD  P G+D  PG
Sbjct: 227 QRGAGTPGAPGAPGNAG-----PAGPSGQDGFP-GQDGAPG 261


>Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical
           protein F54D1.2 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 136 QRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDPEPG 258
           QRG   PGA   PGN G     P+    QD  P G+D  PG
Sbjct: 211 QRGAGTPGAPGAPGNAG-----PAGPSGQDGFP-GQDGAPG 245


>U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protein
           145 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +1

Query: 136 QRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDPEPG 258
           QRG+  PGA   PGN G     P+    QD  P G+D  PG
Sbjct: 211 QRGSGAPGAPGAPGNAG-----PAGPAGQDGFP-GQDGAPG 245


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 136 QRG-TLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDPEPGLP 264
           Q+G T HPGA  TPG+ G    P  A  D    P G     G P
Sbjct: 264 QKGETGHPGAQGTPGHNGPTGPPGDAGPDGGPGPQGEQGADGGP 307


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +1

Query: 154 PGACRTPGNRGLQCRPPSAREDQDHHP*GRDPEPGLP 264
           PG    PG  G   RPP   E+QD  P    P PG P
Sbjct: 110 PGVPGAPGRPGTPGRPPIVCEEQDVPPCNPCP-PGPP 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,268,916
Number of Sequences: 27780
Number of extensions: 192828
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)