Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4709
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   1.4  
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   4.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   4.4  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    24   5.8  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    24   7.6  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    24   7.6  

>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 226 LQDHSGSLPFRTKQKKINYQNQFKHSRGG 312
           L D  GS PF++    +NY N   +S GG
Sbjct: 247 LGDGPGSYPFKSAVWHVNYGNPEMNSNGG 275


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 68  NINPRPNKYVIHYKHLILKKFSLTSLH 148
           N+ P P K V+H + L  K++S T ++
Sbjct: 230 NLTPPPGKRVLHNRDLNTKQWSSTRVN 256


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 132  PSLHFTNHFKIGFENYRFFRISSEPHHQILMIT-GPFGK 245
            PS +F N F+  ++     +I   P H +L+ T  PF K
Sbjct: 1051 PSDYFANFFRASYKWQELLQIRDNPTHGLLVETKHPFIK 1089


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 132  PSLHFTNHFKIGFENYRFFRISSEPHHQILMIT-GPFGK 245
            PS +F N F+  ++     +I   P H +L+ T  PF K
Sbjct: 1051 PSDYFANFFRASYKWQELLQIRDNPTHGLLVETKHPFIK 1089


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 74  NPRPNKYVIHYKHLILKKFSLTSLHKSLQDRL 169
           NP+  KY+++Y   I+ +F      + L + L
Sbjct: 173 NPKSAKYLLYYTSFIINEFPFEQAFEILSNAL 204


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 182 IFPDFFRTPSSDL--DDYRTI 238
           I  DFF +PS+DL  DD+ T+
Sbjct: 252 IASDFFSSPSADLEADDFTTL 272


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 63  KITLILAQINTLFITS 110
           K+TL+L +  TLFITS
Sbjct: 221 KVTLVLKEYCTLFITS 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,018
Number of Sequences: 5004
Number of extensions: 26830
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)