Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4709
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical ...    27   4.8  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    26   6.3  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    26   6.3  
AC024859-12|AAK29966.1|  477|Caenorhabditis elegans Hypothetical...    26   8.3  

>AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical
           protein F52F10.1 protein.
          Length = 99

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 126 NFPSLHFTNHFKIGFENYRFFRISSEPHHQILMITGPFGKSTLSNKTKKNQLSESVQAFS 305
           +F  ++F NH  + F+ +  F+  +   HQ       F KS++    KK    + +Q FS
Sbjct: 17  SFSRIYFFNHNSVSFQFFLVFQKLTCRSHQDASRNIKFVKSSVGKFFKK----KIIQKFS 72

Query: 306 RGG 314
            GG
Sbjct: 73  TGG 75


>Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical
           protein T26H2.1 protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 283 DN*FFFVLFERVDFPNGPVII 221
           D  FFF ++  VDF N P+++
Sbjct: 385 DTSFFFKVWNEVDFENNPILV 405


>AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical
           protein ZK105.3 protein.
          Length = 802

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 150 NHFKIGFENYRFFRISSEPHHQILMITGPFGKS 248
           N F  G +NY FF ++     Q+L    P GKS
Sbjct: 645 NKFDKGLQNYAFFNLTDNAETQML---NPIGKS 674


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 192 ISSEPHHQILMITGPFGKSTLSNKTKKNQLSESVQAFSRGGPVPNSP 332
           IS   HH+   +T P  ++ + N +++N  + +VQ  +R   V + P
Sbjct: 260 ISLLQHHERPTVTAPLRRNDMMNSSRQNPQNGNVQDENRPEHVYDQP 306


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 192 ISSEPHHQILMITGPFGKSTLSNKTKKNQLSESVQAFSRGGPVPNSP 332
           IS   HH+   +T P  ++ + N +++N  + +VQ  +R   V + P
Sbjct: 260 ISLLQHHERPTVTAPLRRNDMMNSSRQNPQNGNVQDENRPEHVYDQP 306


>AC024859-12|AAK29966.1|  477|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.16 protein.
          Length = 477

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 97  YSLQAFNFKEIFPHFTSQITSR*ALKIIDFSGFLQN 204
           Y L  FN  E FP   SQ+T R   +  +   FL+N
Sbjct: 35  YPLDEFNVAEHFPRGYSQLTQRGFRQAKEVGVFLRN 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,814,092
Number of Sequences: 27780
Number of extensions: 148133
Number of successful extensions: 289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)