Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4709
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 109 LVMNNVFIWARINVIFIKTPSQIILYFRTIFVII 8
           LV N   IW       ++TPS + +    IF II
Sbjct: 72  LVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDII 105


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 215 DLDDYRTIREVYPF 256
           +L++ R ++E YPF
Sbjct: 166 NLEELRDLKETYPF 179


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 215 DLDDYRTIREVYPF 256
           +L++ R ++E YPF
Sbjct: 204 NLEELRDLKETYPF 217


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 6   FMITKIVLK*RIICEGV 56
           F++  I+++  IICEGV
Sbjct: 85  FLLGAILVQVAIICEGV 101


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 109 LVMNNVFIWARINVIFIKTPSQIILYFRTIFVII 8
           LV N   IW       ++TPS + +    IF II
Sbjct: 72  LVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDII 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,703
Number of Sequences: 438
Number of extensions: 1740
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)