Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4707
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0311 + 21936812-21937861 29 3.3
04_04_0057 + 22410167-22411330 29 4.4
05_03_0373 - 13194723-13195847,13196219-13196809 29 5.8
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 29 5.8
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 28 7.7
10_08_0802 + 20680685-20681059,20681218-20681353,20682047-206821... 28 7.7
05_04_0338 - 20392482-20392832,20393236-20393305,20393571-203937... 28 7.7
03_01_0233 + 1833473-1833814,1833910-1834045,1834820-1834953,183... 28 7.7
>02_04_0311 + 21936812-21937861
Length = 349
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 497 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEE 628
WLE V P N+ + P P PPA +SSP + EE
Sbjct: 154 WLEGHVTCPLCRANLEKQPA---PSPPAVEFSSSPAAAAAAAEE 194
>04_04_0057 + 22410167-22411330
Length = 387
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 497 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSP 601
WLE +V P N+ + P P P AA + SP
Sbjct: 164 WLESRVTCPLCRANLEKPPPPPPPPPAAAAASPSP 198
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 442 VSEFGGTWFQLRR*WRVETRSVIDFDLRCSAR 347
V+E G + QL+R WR + R ++D D R R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533
>01_06_1535 + 38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 720 QLSRGSPADSAAVLNALTRQHHKPFRIPRSSSSVGCEVTKGLEARTAAGGCGSTRS--GT 547
+L +P D ++N ++R HH + ++ SS+ E+ +AA G G+ S G
Sbjct: 786 KLGESNPTD---IMNEVSRTHHAIQSLDKAVSSLEMELAVERARSSAAVGAGTAVSSLGP 842
Query: 546 SEMFSKIEGRSTFSSNQ 496
+ F I + FSS +
Sbjct: 843 QKAFVVIGINTAFSSKK 859
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 446 LLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVD 565
L+ +L C ++N+ +LE+++ P +FE + +R+D
Sbjct: 754 LVLELSELCAEQNLEVWYLEDELISPCMFEELQNQGDRID 793
>10_08_0802 +
20680685-20681059,20681218-20681353,20682047-20682180,
20682722-20682827,20683227-20683312,20683648-20683836,
20684349-20684522,20684638-20684751,20684887-20685141
Length = 522
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 668 VNAFNTAAESAGDPRLSCF*VTLNKHNAQ 754
+NA+ + GDPRLSCF + N + +
Sbjct: 206 LNAYRVLFDENGDPRLSCFGLMKNSRDGK 234
>05_04_0338 -
20392482-20392832,20393236-20393305,20393571-20393790,
20394249-20394342,20394754-20394865,20395081-20395487
Length = 417
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = -2
Query: 720 QLSRGSPADSAAVLNALTRQHHKPFRIPRSSSSVGCEVTKGLEARTAAGGCGSTRSGTSE 541
+LS SPA V++ R+ +SS GC R AAG G SG
Sbjct: 18 RLSSSSPAARTRVVHHHRRRRSSSLSFSAPASSHGCPRGARALRRAAAGDGGGNGSGGVS 77
Query: 540 MFSKIEGRSTFSSNQLEKIF 481
+ ++ S+ LE+++
Sbjct: 78 TGTVDPAAASSPSSSLEELY 97
>03_01_0233 +
1833473-1833814,1833910-1834045,1834820-1834953,
1835379-1835484,1836339-1836424,1836816-1837004,
1837131-1837322,1837407-1837520,1837614-1837910
Length = 531
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 668 VNAFNTAAESAGDPRLSCF*VTLNKHNAQ 754
+NA+ + GDPRLSCF + N + +
Sbjct: 195 LNAYRVLFDENGDPRLSCFGLMKNSRDGK 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,474,278
Number of Sequences: 37544
Number of extensions: 433632
Number of successful extensions: 1272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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