Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4707
         (817 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023033-1|AAY55449.1|  186|Drosophila melanogaster IP04035p pro...    29   7.6  
AY061331-1|AAL28879.1|  403|Drosophila melanogaster LD25702p pro...    29   7.6  
AE014296-1025|AAF50735.1|  525|Drosophila melanogaster CG10489-P...    29   7.6  
AE013599-2059|AAF58136.1|  165|Drosophila melanogaster CG12959-P...    29   7.6  
AB102715-1|BAD10843.1|  403|Drosophila melanogaster DNA polymera...    29   7.6  

>BT023033-1|AAY55449.1|  186|Drosophila melanogaster IP04035p
           protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = +3

Query: 54  VSNRLHTSVCLHAQYKNACQNGALTGQVSPSSQNTNIIRHQSLWTFIRIRGTKSLQQ*VR 233
           ++  L  ++ LH  ++   +NGA +    P   N +   H   +T+ +I       Q +R
Sbjct: 41  LTGTLTNALRLHLPHR---RNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILR 97

Query: 234 VRRSHGLRPSICSLTMSAVCCSKL 305
                GLR  IC L     C   L
Sbjct: 98  GHTRQGLRCRICKLNAHGDCAPNL 121


>AY061331-1|AAL28879.1|  403|Drosophila melanogaster LD25702p
           protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 509 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLR 637
           ++DLP + E + ++    D  PP A++   PF  S      LR
Sbjct: 171 RLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELR 213


>AE014296-1025|AAF50735.1|  525|Drosophila melanogaster CG10489-PA
           protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 509 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLR 637
           ++DLP + E + ++    D  PP A++   PF  S      LR
Sbjct: 293 RLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELR 335


>AE013599-2059|AAF58136.1|  165|Drosophila melanogaster CG12959-PA
           protein.
          Length = 165

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = +3

Query: 54  VSNRLHTSVCLHAQYKNACQNGALTGQVSPSSQNTNIIRHQSLWTFIRIRGTKSLQQ*VR 233
           ++  L  ++ LH  ++   +NGA +    P   N +   H   +T+ +I       Q +R
Sbjct: 27  LTGTLTNALRLHLPHR---RNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILR 83

Query: 234 VRRSHGLRPSICSLTMSAVCCSKL 305
                GLR  IC L     C   L
Sbjct: 84  GHTRQGLRCRICKLNAHGDCAPNL 107


>AB102715-1|BAD10843.1|  403|Drosophila melanogaster DNA polymerase
           epsilon secondsubunit protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 509 KVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLR 637
           ++DLP + E + ++    D  PP A++   PF  S      LR
Sbjct: 171 RLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELR 213


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,828,632
Number of Sequences: 53049
Number of extensions: 742488
Number of successful extensions: 2262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)