Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4706
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.58 
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   1.8  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    25   7.2  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    25   7.2  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   7.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.5  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   9.5  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   9.5  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 111 LRESHQYYRAVVRMHLVLL 167
           L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 323 LYAHTSGTTIELTCEAGGSSAPLVHWFKNDFSVYQYDVESNELIDSSPTS 472
           LY +T+G+++  T   G  +  L ++F +D  +Y+   E  E  +S  T+
Sbjct: 317 LYNYTNGSSVWQTHMEGLMNKALDYYFTSDKIIYEPSCEPTESCNSDQTA 366


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 173 RAGLLGSCQSAHLNKHIKLVSDIDNSIENGVQAKS 277
           + GL+GSC ++      +  S    +I+ G++ KS
Sbjct: 374 KVGLIGSCTNSSYEDMSRAASICQQAIDKGIKTKS 408


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 197 QSAHLNKHIKLVSDIDNSIENGVQAKSDGS 286
           Q AH+N+    +SD+DNS    V+   +G+
Sbjct: 47  QCAHMNRRPAWISDLDNSSLEVVRHLGEGN 76


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 350 IELT--CEAGGSSAPLVHWFKNDFSVYQYDVESNELIDSS 463
           +ELT  CEA G+   L++    D S   YD+E   L+ +S
Sbjct: 444 VELTRACEAMGAGEVLLNCMDQDGSNAGYDIELVRLVKNS 483


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 264 TPFSILLSMSETSLMCLFKWADWHEPSS 181
           +P+ +L+ +S   ++ LF W   H P S
Sbjct: 60  SPWQVLMYVSSVLMLILFSWLAIHIPKS 87


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 368 AGGSSAPLV--HWFKNDFSVYQYDVESNELIDSSPTSIA 478
           AG SS  ++   W  NDF + +  + SNE +    TS+A
Sbjct: 108 AGTSSGHVLLNDWRTNDFQILKPGLSSNESVTLPVTSLA 146


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 197 QSAHLNKHIKLVSDIDNSIENGVQAKSDGSHKYLLIT 307
           Q    N+    +SD+D S+   +QAK +  +  LL T
Sbjct: 246 QELERNEEFNALSDLDPSLRRCLQAKCNRKYSLLLDT 282


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 404 KNDFSVYQYDVESNELIDSSPTSIARI 484
           +NDF++Y YD E  E  + S     ++
Sbjct: 379 QNDFTIYDYDSEDEEYNNPSTQKTEKV 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,419
Number of Sequences: 5004
Number of extensions: 51796
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)