Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4706
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0164 + 15265878-15268701,15268782-15269200                       30   1.4  
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985     29   2.4  
06_01_0843 - 6406538-6406679,6407659-6407945                           28   5.6  
10_01_0313 + 3447065-3448204                                           27   9.8  
09_06_0050 + 20493063-20493137,20493253-20493347,20493450-204935...    27   9.8  

>09_04_0164 + 15265878-15268701,15268782-15269200
          Length = 1080

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 389 LVHWFKNDFSVYQYDVESNELIDSSPTSI 475
           L  W  N   +Y  DVE+N L D  PTSI
Sbjct: 304 LPRWLANCTILYLLDVENNSLADDLPTSI 332


>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
          Length = 773

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 411 SFLNQCTNGAEDPPASQVNSIVVPEVCAYNGRGPCVINKYL*D 283
           S++ +C  G E  P  Q N     +VCA+  R PC+  +Y  D
Sbjct: 295 SYICRCNEGYEGNPYEQ-NGCSGLDVCAHPERNPCMYPEYCKD 336


>06_01_0843 - 6406538-6406679,6407659-6407945
          Length = 142

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 334 MCVQR*GPLRDQ*IFMRSIRFCLHTILNTV--IDVRNQLNVFIQMGG 200
           +C +R GP RD  I+M  + FC H        +D  N+   F + GG
Sbjct: 81  ICNRRLGPGRDTFIYMGEVAFCSHECRQQQMNLDELNEKKCFQREGG 127


>10_01_0313 + 3447065-3448204
          Length = 379

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 392 VHWFKNDFSVYQYDVESNEL 451
           VHWF + ++V  +D+ES +L
Sbjct: 237 VHWFLDGYNVLMFDLESQKL 256


>09_06_0050 +
           20493063-20493137,20493253-20493347,20493450-20493547,
           20493684-20493842,20493944-20494055,20494185-20494728,
           20494818-20494915,20494990-20495229,20495312-20495426,
           20495528-20495732,20495805-20496373
          Length = 769

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 372 PASQVNSIVVPEVCAYNGRGPCVINKYL*DPSDFACTPFSILLSMS 235
           P + V  +V PEV  ++ RGP  ++  +  P D A    +IL + S
Sbjct: 483 PKTIVGELVAPEVAYFSSRGPSSLSPSILKP-DIAAPGVNILAAWS 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,419
Number of Sequences: 37544
Number of extensions: 336118
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)