Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4703
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    27   3.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   6.9  

>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 341 ATLDPRERRSRLYSRKLTESCNRRGHHIYKGSRR 240
           ATL+  ERR RL+S K  +S +++ +  Y G +R
Sbjct: 377 ATLNIEERR-RLFSGKFNKSGDKKSNDNYNGMKR 409


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 146 IIAVRRCRYIANILS---QKGSWQRVSLP 223
           I+ V R  ++A+I S   +KG+W R SLP
Sbjct: 488 IVTVDRHFFLASIFSRNDEKGTWDRQSLP 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,546
Number of Sequences: 5004
Number of extensions: 55170
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)