Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4703
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     29   3.1  
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    28   9.5  
04_04_0310 - 24301274-24301945,24302035-24302365,24302629-243029...    28   9.5  

>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 204  GSGCHCPTRVYFSSRTLIYMMTSSVTG 284
            GS  + PT V  SS TLIY++  ++TG
Sbjct: 4771 GSSHNSPTHVMDSSNTLIYIIKEAITG 4797


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 499 INIIYDISQIMCSFELDNENWRIKSRIPLCDVLVI 395
           + ++   + + CS+ L  E  R K  IPLCD L++
Sbjct: 85  LELLRGFANVDCSYGLSPEELRAK--IPLCDALIV 117


>04_04_0310 -
           24301274-24301945,24302035-24302365,24302629-24302954,
           24303039-24303413
          Length = 567

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 380 PERRVPERGPV*PATLDPRERRSRLYSRKLTESCNRRGHHIYKGSRREV 234
           P+R +P+R     A +   +   R YS  L ++C+RRG H   G   ++
Sbjct: 305 PDRLLPDR-----ALVGMAQHFMRSYSHLLIQTCHRRGVHAMGGMAAQI 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,731,338
Number of Sequences: 37544
Number of extensions: 329640
Number of successful extensions: 781
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)