Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4703
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    29   2.8  
L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with...    28   8.5  

>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 481  ISQIMCSFELDNENWRIKSRIPLCDVLVIEQTCGQSGGFRSV-GQSD-QRPWTLEN 320
            I + MC+ E+D     +KS  P      +  TCGQS     V G  D QR W ++N
Sbjct: 1350 IREKMCN-EVDYNGLHLKSSAPFKMRRYLPATCGQSKRITQVNGYCDNQRGWVIQN 1404


>L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with ran
            (nuclear import/export) function protein 2, isoform a
            protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -3

Query: 465  VVLN*TMRIGG*NRESLYVTFWLLNRPVARAAGSGAWASLTSDLGPSRTKISSLFTE 295
            V  N   R+    R  +  T  L+N  VA+ AG+G  A      G     IS LF+E
Sbjct: 883  VAENIVRRVESVKRNPIPATTQLVNNIVAQCAGTGVKAETDWGYGADPQVISRLFSE 939


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,631
Number of Sequences: 27780
Number of extensions: 304030
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)