Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4699
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 134 4e-32
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 114 5e-26
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 28 5.1
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 27 8.9
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000... 27 8.9
02_01_0412 - 3005600-3007759 27 8.9
01_05_0604 - 23583244-23584989 27 8.9
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 134 bits (325), Expect = 4e-32
Identities = 67/119 (56%), Positives = 83/119 (69%)
Frame = +3
Query: 72 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 251
Q MK D ++ + + F ++K +LQEAR F+ + RKC ++TK+LYLLNQGE
Sbjct: 3 QPYMKKDDDDEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETF 62
Query: 252 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEY 428
T EAT++FFA TKLFQSKD LRRLVYL IKELSP + +VIIVTSSL KDM K D Y
Sbjct: 63 TKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMY 121
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 491 ERYMKQAIVDKNP 529
ERY+KQAIVDKNP
Sbjct: 142 ERYLKQAIVDKNP 154
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 114 bits (275), Expect = 5e-26
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 17/126 (13%)
Frame = +3
Query: 102 KEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFF 281
+EE + F ++K +LQEAR F+ + R+C ++TK+LYLLNQG+ T EAT++FF
Sbjct: 15 EEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFF 74
Query: 282 ATTKLFQSKDVVLRRLVYLCIKELSPMAQD-----------------VIIVTSSLTKDMT 410
ATTKLFQSKD LRR+VYL IKELSP A + VIIVTSSL KDM
Sbjct: 75 ATTKLFQSKDAGLRRMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLMKDMN 134
Query: 411 GKDDEY 428
K D Y
Sbjct: 135 SKTDMY 140
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 491 ERYMKQAIVDKNP 529
ERY+KQAIVDKNP
Sbjct: 161 ERYLKQAIVDKNP 173
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 374 DHCDFFTYEGHDG*RR*VPDL 436
D+CD F+ +DG RR VPD+
Sbjct: 154 DYCDSFSLSDNDGDRRIVPDI 174
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -1
Query: 591 LNPGTGADRCKAETSAADPTAGFLSTIACFMYLSNSLQHCTVCDATQSSNGG--RSGTHR 418
+ P T + TS A PTA S A Y + S + D + GG SGT
Sbjct: 183 IQPYTQTPDADSATSGAQPTAKLDSISAMEAYKAKSHEELRWEDYQRGDKGGPNPSGTPA 242
Query: 417 LYPSCPS 397
PS PS
Sbjct: 243 ATPSFPS 249
>04_04_0422 +
25098612-25099025,25099500-25099633,25099817-25100067,
25100130-25100494
Length = 387
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 289 VVAKNISVASCVVNSSPWFSK*SIFVKIWMHFLGCTGVELKYLASCKRV 143
V+ + A+ V + W SK S+ V +W+ LG + + Y+ +R+
Sbjct: 312 VILPTLVAAADVFRLTTWSSKPSVCVGMWIPHLGHARLRIVYIIISRRL 360
>02_01_0412 - 3005600-3007759
Length = 719
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 93 GEPSLCSALLIFYCNL 46
G P LCS +L+ +CNL
Sbjct: 660 GNPKLCSPMLVHHCNL 675
>01_05_0604 - 23583244-23584989
Length = 581
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 289 VVAKNISVASCVVNSSPWFSK*SIFVKIWMHFLGCTGVELKYLASCKRV 143
V+ + A+ V + W SK S+ V +W+ LG + + Y+ +R+
Sbjct: 380 VILPELVAAADVFRLTTWSSKPSVCVGMWIPHLGHARLRIVYIIISRRL 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,519,647
Number of Sequences: 37544
Number of extensions: 330549
Number of successful extensions: 782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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