Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4699
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical pr...   148   3e-36
Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical pr...   147   6e-36
AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical
           protein T14G10.5b protein.
          Length = 883

 Score =  148 bits (359), Expect = 3e-36
 Identities = 68/120 (56%), Positives = 92/120 (76%)
 Frame = +3

Query: 69  EQSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEE 248
           + S MK  +  +E   NV+ +LDKT++LQEAR FN TP++ RKC  IL+K++Y++ QGE 
Sbjct: 10  QSSRMKTNKKDEETGGNVYAHLDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGES 69

Query: 249 LTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEY 428
           +   EAT+ FF  TKL+QSKDV LRR+VYL +KEL+ ++ DVIIVTSSLTKDMTG++D Y
Sbjct: 70  IGRTEATEAFFGVTKLWQSKDVSLRRMVYLAVKELAEVSDDVIIVTSSLTKDMTGREDLY 129



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +1

Query: 430 RPAAIRALCSITDSTMLQAI 489
           R AAIRALC ITD+ MLQ I
Sbjct: 130 RAAAIRALCKITDTGMLQTI 149



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 449 LCVASQTVQCCKLFERYMKQAIVDKN 526
           LC  + T    +  ERYMKQAIVD+N
Sbjct: 137 LCKITDTGML-QTIERYMKQAIVDRN 161


>Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical
           protein T14G10.5a protein.
          Length = 870

 Score =  147 bits (356), Expect = 6e-36
 Identities = 67/116 (57%), Positives = 90/116 (77%)
 Frame = +3

Query: 81  MKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQ 260
           MK  +  +E   NV+ +LDKT++LQEAR FN TP++ RKC  IL+K++Y++ QGE +   
Sbjct: 1   MKTNKKDEETGGNVYAHLDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRT 60

Query: 261 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEY 428
           EAT+ FF  TKL+QSKDV LRR+VYL +KEL+ ++ DVIIVTSSLTKDMTG++D Y
Sbjct: 61  EATEAFFGVTKLWQSKDVSLRRMVYLAVKELAEVSDDVIIVTSSLTKDMTGREDLY 116



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +1

Query: 430 RPAAIRALCSITDSTMLQAI 489
           R AAIRALC ITD+ MLQ I
Sbjct: 117 RAAAIRALCKITDTGMLQTI 136



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 449 LCVASQTVQCCKLFERYMKQAIVDKN 526
           LC  + T    +  ERYMKQAIVD+N
Sbjct: 124 LCKITDTGML-QTIERYMKQAIVDRN 148


>AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical
           protein ZK105.3 protein.
          Length = 802

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 298 NSFVVAKNISVASCVVNSSPWFSK*SIFVKIWMHFLGCT 182
           NS+V+ KN++    VVN+ PW     +F +++  +   T
Sbjct: 486 NSYVLKKNLNTVLIVVNNYPWKYGMGLFQRLYEPYFAST 524


>Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical
           protein F13D2.4 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 129 NLDKTTLLQEARYFNSTPVH 188
           +LDKTT+  EA+YF+  PV+
Sbjct: 225 DLDKTTVTVEAKYFHGKPVN 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,286
Number of Sequences: 27780
Number of extensions: 295424
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)