Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4698
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   4.9  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    26   6.5  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   8.6  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   8.6  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.6  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 568 LINTHISNKFHDLSVCGRTCRDTDLTEIFIGGRTSCESARVGTAAPPIFAVKQ 726
           L NTH+S+ FH L             +IF   +T  E AR G  A  +++ KQ
Sbjct: 318 LNNTHLSDHFHYLGKELNLMDPKVPEDIF---KTHLEVARTGLGASGVYSAKQ 367


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 644 VKSVSLHVRPQTDRS*NLLDM*VFIKTHSQ 555
           ++S+SL VRP T    +  D+ +F+K H +
Sbjct: 83  IESLSLQVRPPTTLELSFTDVDMFLKYHRE 112


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 319 YTLFLIKCDACI-ITFASIAFLRMFSLHKYLCKHL 420
           Y   L +C+AC  I  A       + LH Y CKHL
Sbjct: 177 YESNLYECNACREIVIAGYVCDCGYCLHVYCCKHL 211


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 304 LPTQFYTLFLIKCDACIITFASIAFLRMFSLHKYLCKHLK 423
           LP Q Y   LI   +CI T  S       +L KYLC +L+
Sbjct: 127 LPDQVY--HLIDNHSCIQTAVSHLLRNHQALFKYLCDYLR 164


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 132 AHSPPGVKCLLEPIDVYNVNAPPTFRYIVIVL 37
           A  PP +K    P+D+ N++A    + I ++L
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLKKIDLLL 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,602
Number of Sequences: 5004
Number of extensions: 59276
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)