Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4698
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0712 - 20878272-20879633                                         29   5.2  
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    28   6.8  
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022...    28   9.0  
11_06_0610 - 25449085-25453284                                         28   9.0  

>07_03_0712 - 20878272-20879633
          Length = 453

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 126 SPPGVKCLLEPIDVYNVNAPPTFRYI 49
           +P G +C  +P  +YN ++ PTFR +
Sbjct: 121 APCGERCFKQPSPLYNPSSSPTFRVL 146


>09_02_0286 -
           6898041-6898144,6898881-6899005,6899158-6899207,
           6899245-6899386,6899951-6900020,6900077-6900216,
           6900291-6900365,6901083-6904723
          Length = 1448

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 153 NAYVGGRAHSPPGVKCLLEPIDV----YNVNAPPTFRYIVIVLRS 31
           NA+ G  +H+ P   C L  +D+     N   PP+F     VLRS
Sbjct: 117 NAFYGNLSHAAPSPPCALVEVDISSNALNGTLPPSFLAPCGVLRS 161


>12_02_1229 +
           27197464-27197481,27200438-27201583,27201935-27202201,
           27202849-27202882,27202997-27203100,27203174-27203308,
           27203367-27203511,27203864-27203880
          Length = 621

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/87 (27%), Positives = 43/87 (49%)
 Frame = +1

Query: 181 HFNMKMIFFITLVERRANSPPDGEWLPSPMDVSNATSTVKLLPTQFYTLFLIKCDACIIT 360
           H+++  + ++ L    A S  D +W PSP  +   +ST      +    FL + DA + T
Sbjct: 108 HYDVLWMPYLILHRLPAASLSD-QWPPSPFILHVFSSTTGRWEEKS---FLREGDATMGT 163

Query: 361 FASIAFLRMFSLHKYLCKHLKGSLWMH 441
            A ++  R+    K    +L+G+L+MH
Sbjct: 164 MADVSLARVPYHCKTHSVYLRGALYMH 190


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 226  RANSPPDGEWLPSPMDVSNATSTVKLLP 309
            +A+SPP  + LP P  VS    TVK LP
Sbjct: 1110 KASSPPTEKSLPPPATVSLPPPTVKPLP 1137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,666,916
Number of Sequences: 37544
Number of extensions: 379597
Number of successful extensions: 789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)