Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4696
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    64   2e-11
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    27   3.8  

>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 29/61 (47%), Positives = 43/61 (70%)
 Frame = +3

Query: 162 VFADGLARATAAGFNELRNAVFARVAQHSIRRLACNVFTHLHNLDLGFHLGRQTGALSKV 341
           V   G AR  +  F ELRN+VFA V+Q +IR ++ NV+ HL NLD+ FHL +QTG++++ 
Sbjct: 166 VLGYGFARIFSTVFQELRNSVFAIVSQSAIRSVSSNVYQHLLNLDMNFHLSKQTGSITRA 225

Query: 342 I 344
           +
Sbjct: 226 M 226


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 317 PAEMEAEVQIV--QMREDVAGEAADGVLGDAREHGVAQLVEAGRR 189
           P+  +A V I   Q   DVA +A+D VL D     +   +E GRR
Sbjct: 709 PSLKQANVGIAMGQNGSDVAKDASDIVLTDDNFSSIVNAIEEGRR 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,483
Number of Sequences: 5004
Number of extensions: 41251
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)