Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4696
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149...    43   2e-04
01_02_0078 - 10894871-10895841,10897268-10898426                       29   3.0  
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555...    29   3.9  
10_08_0611 - 19213994-19214053,19214776-19215732                       29   5.2  
09_02_0238 + 6143215-6143643                                           29   5.2  
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623     28   6.9  

>06_01_0193 -
           1491710-1491739,1492194-1492319,1492631-1492766,
           1493048-1493112,1493213-1493305,1493433-1493498,
           1493763-1493843,1493977-1494032,1494692-1494780,
           1495340-1495425,1495531-1495647,1496109-1496254,
           1496665-1496725,1496831-1496914,1497028-1497135,
           1497286-1497388,1497802-1497845,1498100-1498584,
           1499417-1499603,1500150-1500362,1501066-1501323
          Length = 877

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +3

Query: 270 VFTHLHNLDLGFHLGRQTGALSKVI 344
           VF+HLH LDL +HL RQTGAL+++I
Sbjct: 382 VFSHLHELDLRYHLSRQTGALNRII 406


>01_02_0078 - 10894871-10895841,10897268-10898426
          Length = 709

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -1

Query: 310 RWKPRSR--LCRCVKTLQARRRMECWATRANTALRSSLKPAAVARASPSANT 161
           RW+ RS   L R V   + RRR+   +T A   +  S +PAA   A+PSA++
Sbjct: 444 RWRSRSSAPLPRPVPPCRGRRRL-ARSTTAAVVIVGSSEPAAAKLATPSASS 494


>10_02_0127 +
           5555226-5555446,5555475-5555500,5555702-5555790,
           5558112-5558843
          Length = 355

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 226 NTALRSSLKPAAVARASPSANTFKKHLGVAKRNAARFQRHDRTRLVVG 83
           N+ L  SLKP  ++ A P+  +  ++ G +  +  R  R  R   VVG
Sbjct: 115 NSLLNLSLKPLCISTAKPATASSSRNNGASSSHDRRLLRLRRRTTVVG 162


>10_08_0611 - 19213994-19214053,19214776-19215732
          Length = 338

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 343 ITLDRAPVCLPRWKPRSRLCR--CVKTLQARRRMECW-ATRANTALRSSLKPAAVARASP 173
           +T DRA +    + P  R  R  CV  L +RRR E W A R  +A  + ++  A +R   
Sbjct: 115 LTYDRADMAFAHYGPFWRQMRKLCVVKLFSRRRAETWLAVRDESA--ALVRAVAASRGEA 172

Query: 172 SAN 164
           + N
Sbjct: 173 AVN 175


>09_02_0238 + 6143215-6143643
          Length = 142

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 302 AEVQIVQMREDVAGEAADGVLGDAREHGVAQLVEAGRRGARQPVC 168
           + + I+Q R DV G   DG + D  +  +  L    R  A  P C
Sbjct: 29  SSMHILQKRNDVVG--TDGAIADEEQEDLTTLATRVRAAAASPAC 71


>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
          Length = 400

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = -3

Query: 332 QGPGLPAEMEAEVQIVQMREDVAGEAADGVLGDAREHGVAQLVEAGRRGAR 180
           Q  G  A + A+ Q   M E   G+AA G  G A   G      AG  GAR
Sbjct: 235 QEQGQAAPVAAQAQAAAMAEQAQGQAAGGGRGGAGAGGGHGGAGAGAGGAR 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,321,322
Number of Sequences: 37544
Number of extensions: 269737
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)