Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4696
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   4.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 244 CWATRANTALRSSLKPAAVARAS 176
           C  + A  +L SSL  AAVA A+
Sbjct: 30  CTTSPATASLESSLSAAAVAAAA 52


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 264 CNVFTHLHNLDLGFHLGRQTGALSKVIVVFHSF 362
           C+V    H   L FHL ++  A + + ++  +F
Sbjct: 349 CSVTNSPHQKKLRFHLAKERKASTTLGIIMSAF 381


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 156 LNVFADGLARATAAGFNELRNAVFARVAQHSIRRLACNVFTHLHNL 293
           LN+  + L    A  F +L       +  +SI R+  N F  L+NL
Sbjct: 340 LNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNL 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,476
Number of Sequences: 438
Number of extensions: 3104
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)