Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4694
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U00047-5|AAA50691.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41749-2|AAB52486.2|  308|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine re...    28   8.8  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   8.8  

>L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical
           protein K06H7.2 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 181 RK*PKFYYIFFMYAYYGKKYRIPTSIVDMFHSEKTLNFTS*STVSHNTGLCR 336
           R+  KF+  F  Y Y G+ Y+I ++I    ++  TLNF +     H TGL +
Sbjct: 333 RENAKFWSDFSEYCYSGRCYQISSNINP--YNSMTLNFINNCVSIHVTGLAK 382


>U00047-5|AAA50691.1|  399|Caenorhabditis elegans Hypothetical
           protein ZK418.7 protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = +2

Query: 191 RNFTTYFLCMLIMV-------KNIEYLQA*LTCFTQKKHS 289
           + F TYFL +L ++        NI YL A L CFTQ+K S
Sbjct: 73  KEFRTYFLAILPIIFSVIACLLNIGYLIAQLKCFTQEKTS 112


>U41749-2|AAB52486.2|  308|Caenorhabditis elegans Hypothetical
           protein F09E10.5 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 205 IFFMYAYYGKKYRIPTSIVDMFHSEKTL 288
           I F+Y ++ KKY +    ++ FH +KT+
Sbjct: 187 IHFVYGWHHKKYTMTREEMEYFHKDKTV 214


>AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein22 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 457 VSDSFYLNYKLSLKKHRTDVSLIILNMSFYSLRL*CVIVTVLFRLSFSNPSR 612
           VS+ FY  YK S+  ++T      + +S Y +R   V  T L  L+  +  R
Sbjct: 108 VSEMFYFRYKASILNYKTYRFTYFIKLSVYFIRCISVFDTFLAILTSQDAYR 159


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 106  VLHLIDCFRLIYI*LGNDPRQIFPVRK*PKFYYIFFMYAYYGKKYRIPTSIVD 264
            ++  I  F  +Y+ L    RQ+F V +   F +  F++     K+RI  SI D
Sbjct: 2241 IVSQIYLFSKLYLTLNESNRQLFRVHRFSTFCFSQFIFFIILIKFRISISITD 2293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,910,322
Number of Sequences: 27780
Number of extensions: 356285
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)