Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4694
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.80 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 646 SFQRICSNVLTPCSDWKTTTETTL*QSRIKVLNYKKTYL 530
           ++  + +   +P ++  TTT TT+ Q  IKV    K  L
Sbjct: 375 NYSLVPTTTASPTTEPSTTTSTTISQKHIKVFVVNKDIL 413


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -2

Query: 711 ILIWVYTYTCTCQP*VQRPSLPHFNEYVLTC 619
           + IW  T      P ++ P L   N Y   C
Sbjct: 161 VFIWNMTDPLVVNPEIELPQLDISNNYTTDC 191


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 383 RRGKYEQPSFIRVDASLQSP 324
           +RGKYE+P+   +     SP
Sbjct: 610 KRGKYEEPTVGEISQDGSSP 629


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 161 RDRFFL*GNNRNFTTYFL 214
           +D   L GNN N  TYF+
Sbjct: 370 KDTEILIGNNENEGTYFI 387


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 161 RDRFFL*GNNRNFTTYFL 214
           +D   L GNN N  TYF+
Sbjct: 370 KDTEILIGNNENEGTYFI 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,326
Number of Sequences: 438
Number of extensions: 4473
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)