Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4693
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 429 LPGFGSLTPNKRFQTIKI 376
           +PG  S + NK F TIKI
Sbjct: 72  IPGVNSTSENKTFPTIKI 89


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 429 LPGFGSLTPNKRFQTIKI 376
           +PG  S + NK F TIKI
Sbjct: 72  IPGVNSTSENKTFPTIKI 89


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 520 VLRGHLASYYALRLGTNKSSIQS 588
           ++ GH  S++ L + ++ SS+QS
Sbjct: 802 MIYGHQQSHHGLHINSSPSSVQS 824


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 269 EGGRSCQRRTDLFIGYTCFITNL 337
           E  R  ++R +LFI   CF++ L
Sbjct: 406 EWPRLLRKRKELFIAIVCFVSYL 428


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 269 EGGRSCQRRTDLFIGYTCFITNL 337
           E  R  ++R +LFI   CF++ L
Sbjct: 459 EWPRLLRKRKELFIAIVCFVSYL 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,049
Number of Sequences: 438
Number of extensions: 3184
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)