Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4691
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   1.2  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   2.8  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   2.8  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    25   3.7  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   6.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    24   6.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    23   8.6  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    23   8.6  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 171 CHSLGWLLPAFPI*FSTKKILKNCICNLIPNI 76
           C S  WL+  F    + +   KN I  L+PNI
Sbjct: 600 CFSSEWLIKCFEDMIANESASKNEIMKLVPNI 631


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 140 NAGSNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDK 253
           + G    K + K ANKS D+D    +P  EG +F +++
Sbjct: 213 SVGGGGRKLFRKVANKSSDYDPDLCAPRTEG-SFIYEE 249


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 126 KIKWGMPEVTNPKNG 170
           KI W +P+  NPK+G
Sbjct: 404 KISWALPKPRNPKHG 418


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 152 NQPKEWHKDANKSPDHDQGPSS 217
           N PKE   +A  SPDH  GP +
Sbjct: 267 NYPKEVILEAIDSPDHIPGPDA 288


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 320 YNKERHLLYYCHHLDYFDHRLAFYQT 243
           Y+ E  L+ Y HHL   D  LA   T
Sbjct: 543 YHSETELMRYIHHLQSKDLSLAHAMT 568


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 150 VTNPKNGIKMLTNRLIMIKDLHLQPK 227
           V +PK+  K++ +   +I+D H+QP+
Sbjct: 886 VCSPKSYYKLIPSFEQLIQDFHIQPQ 911


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 181  SIFMPFFGLVTSGIPHLIF 125
            ++ M  FG +T  IPHLI+
Sbjct: 1492 TLLMLLFGTMTVWIPHLIY 1510


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 269 DHRLAFYQT*RLPLLWLEMKVLDHD 195
           D+R A  +  R P+L+  +   DHD
Sbjct: 43  DNRAAVQENERYPILYTPLSTSDHD 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,184,700
Number of Sequences: 5004
Number of extensions: 22697
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)