Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4691
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883...    28   1.9  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    27   4.5  
05_06_0134 + 25912474-25912561,25912678-25913230,25914063-259145...    26   7.8  

>07_03_1042 +
           23487326-23487443,23487555-23487957,23488057-23488397,
           23488621-23489660
          Length = 633

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 152 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFD 250
           N  ++WH  +N+  + + GP  P   G   T+D
Sbjct: 526 NSVQQWHHRSNQQMEMEPGPMLPGGLGLGLTYD 558


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 143 AGSNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDKK 256
           +G  QP      A  SPD  QG   P+ +GE  T D+K
Sbjct: 252 SGEQQPSGVDP-AELSPDQVQGDVDPSDKGEESTADQK 288


>05_06_0134 +
           25912474-25912561,25912678-25913230,25914063-25914556,
           25914804-25914942,25915511-25915582,25915671-25915742,
           25917202-25917282,25917385-25917545,25917626-25917894,
           25917996-25918122,25918193-25918261,25918366-25918558,
           25918605-25919046
          Length = 919

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 135 WGMPEVTNPKNGIKMLTNRLI 197
           +G+ +V NP+NG  + TN+L+
Sbjct: 744 FGLSKVFNPENGTHVSTNKLV 764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,164,117
Number of Sequences: 37544
Number of extensions: 130339
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)